Contig 002185:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017M03Sequence463002185 (4)ref|XP_007044696.1|2e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras411002185 (4)ref|XP_007044696.1|1e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras
JMSF018M03Sequence463002185 (4)ref|XP_007044696.1|2e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras411002185 (4)ref|XP_007044696.1|1e-42RNA polymerases N / 8 kDa subunit [Theobroma cacao] gb|EOY00528.1| RNA polymeras

Alignment

This contig is upended


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JMSF018M03-                            GATATCGCCACCTTCTTCTACAGCTCGGAAACTAGGGCAGACA
rJMSF018M03+                           GATATCGCCACCTTCTTCTACAGCTCGGAAACTAGGGCAGACA
rJMSF017M03+                           GATATCGCCACCTTCTTCTACAGCTCGGAAACTAGGGCAGACA
JMSF017M03-                            GATATCGCCACCTTCTTCTACAGCTCGGAAACTAGGGCAGACA
                      ____________________________________________________________
consensus                              GATATCGCCACCTTCTTCTACAGCTCGGAAACTAGGGCAGACA
 
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JMSF018M03-           GATTCGAGAAGCGAGGATGATCATACCAGTCCGTTGCTTCACCTGTGGAAAGGTCATCGG
rJMSF018M03+          GATTCGAGAAGCGAGGATGATCATACCAGTCCGTTGCTTCACCTGTGGAAAGGTCATCGG
rJMSF017M03+          GATTCGAGAAGCGAGGATGATCATACCAGTCCGTTGCTTCACCTGTGGAAAGGTCATCGG
JMSF017M03-           GATTCGAGAAGCGAGGATGATCATACCAGTCCGTTGCTTCACCTGTGGAAAGGTCATCGG
                      ____________________________________________________________
consensus             GATTCGAGAAGCGAGGATGATCATACCAGTCCGTTGCTTCACCTGTGGAAAGGTCATCGG
 
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JMSF018M03-           AAACAAATGGGACGAGTACCTTGATCTTCTCCAAGCTGATTACACCGAAGGGGATGCTCT
rJMSF018M03+          AAACAAATGGGACGAGTACCTTGATCTTCTCCAAGCTGATTACACCGAAGGGGATGCTCT
rJMSF017M03+          AAACAAATGGGACGAGTACCTTGATCTTCTCCAAGCTGATTACACCGAAGGGGATGCTCT
JMSF017M03-           AAACAAATGGGACGAGTACCTTGATCTTCTCCAAGCTGATTACACCGAAGGGGATGCTCT
                      ____________________________________________________________
consensus             AAACAAATGGGACGAGTACCTTGATCTTCTCCAAGCTGATTACACCGAAGGGGATGCTCT
 
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JMSF018M03-           TGATGCGTTGGGTTTGGTTCGGTATTGCTGTCGAAGAATGCTTATGACTCATGTTGATCT
rJMSF018M03+          TGATGCGTTGGGTTTGGTTCGGTATTGCTGTCGAAGAATGCTTATGACTCATGTTGATCT
rJMSF017M03+          TGATGCGTTGGGTTTGGTTCGGTATTGCTGTCGAAGAATGCTTATGACTCATGTTGATCT
JMSF017M03-           TGATGCGTTGGGTTTGGTTCGGTATTGCTGTCGAAGAATGCTTATGACTCATGTTGATCT
                      ____________________________________________________________
consensus             TGATGCGTTGGGTTTGGTTCGGTATTGCTGTCGAAGAATGCTTATGACTCATGTTGATCT
 
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JMSF018M03-           TATTGAGAAGCTTCTGAACTACAACACTTTGGAGAAAGCCGAGGGCAGTTGATGCAGCCA
rJMSF018M03+          TATTGAGAAGCTTCTGAACTACAACACTTTGGAGAAAGCCGAGGGCAGTTGATGCAGCCA
rJMSF017M03+          TATTGAGAAGCTTCTGAACTACAACACTTTGGAGAAAGCCGAGGGCAGTTGATGCAGCCA
JMSF017M03-           TATTGAGAAGCTTCTGAACTACAACACTTTGGAGAAAGCCGAGGGCAGTTGATGCAGCCA
                      ____________________________________________________________
consensus             TATTGAGAAGCTTCTGAACTACAACACTTTGGAGAAAGCCGAGGGCAGTTGATGCAGCCA
 
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JMSF018M03-           TGTAGGAAGTGGCTACTGGCAAGTGCATGTCTCATCATTTTCTGTTAATGTGAGCATTCT
rJMSF018M03+          TGTAGGAAGTGGCTACTGGCAAGTGCATGTCTCATCATTTTCTGTTAATGTGAGCATTCT
rJMSF017M03+          TGTAGGAAGTGGCTACTGGCAAGTGCATGTCTCATCATTTTCTGTTAATGTGAGCATTCT
JMSF017M03-           TGTAGGAAGTGGCTACTGGCAAGTGCATGTCTCATCATTTTCTGTTAATGTGAGCATTCT
                      ____________________________________________________________
consensus             TGTAGGAAGTGGCTACTGGCAAGTGCATGTCTCATCATTTTCTGTTAATGTGAGCATTCT
 
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JMSF018M03-           CTTATGTTCACAATTGTGAGACGTGTCTATATGCTCGTGATGTACTCGAACAAGTAACAA
rJMSF018M03+          CTTATGTTCACAATTGTGAGACGTGTCTATATGCTCGTGATGTACTCGAAC         
rJMSF017M03+          CTTATGTTCACAATTGTGAGACGTGTCTATATGCTCGTGATGTACTCGAAC         
JMSF017M03-           CTTATGTTCACAATTGTGAGACGTGTCTATATGCTCGTGATGTACTCGAACAAGTAACAA
                      ____________________________________________________________
consensus             CTTATGTTCACAATTGTGAGACGTGTCTATATGCTCGTGATGTACTCGAACAAGTAACAA
 
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JMSF018M03-           AGTGTATGTATTAATGAATTAAAAGTCTAGTCTACAAGCTTTACTCGCGCAAAAAAAAAA
JMSF017M03-           AGTGTATGTATTAATGAATTAAAAGTCTAGTCTACAAGCTTTACTCGCGCAAAAAAAAAA
                      ____________________________________________________________
consensus             AGTGTATGTATTAATGAATTAAAAGTCTAGTCTACAAGCTTTACTCGCGCAAAAAAAAAA