Contig 002177:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023I08Sequence439002177 (4)dbj|BAC58020.1|8e-40angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]751012303 (4)dbj|BAC58020.1|3e-112angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF016J12Sequence542002177 (4)dbj|BAC58020.1|2e-63angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]786012303 (4)dbj|BAC58020.1|6e-129angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF021H18Sequence287002177 (4)dbj|BAC58020.1|4e-34angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]299012303 (4)dbj|BAC58020.1|2e-60angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF029A04Sequence468002177 (4)dbj|BAC58020.1|2e-60angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]743012303 (4)dbj|BAC58020.1|5e-113angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]

Alignment

This contig is upended


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JMSF021H18+                                               TGAACCGAGCCAACCGGAAGCGGA
                      ____________________________________________________________
consensus                                                 TGAACCGAGCCAACCGGAAGCGGA
 
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JMSF021H18+           TAAAGCATGCCTGGAGAGCAAATGCGTGCGGCGAAGTAAGCCAAGGATCAGAGCCATGAC
                      ____________________________________________________________
consensus             TAAAGCATGCCTGGAGAGCAAATGCGTGCGGCGAAGTAAGCCAAGGATCAGAGCCATGAC
 
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JMSF021H18+           CGTGTCAGCAACCTCNTNTGCCNTANTACAATNGACGTGGACAAGTCGAGTGAGTCCGAG
JMSF029A04+                                     TACAATCGACGTGGACAAGTCGAGTGAGTCCGAG
JMSF016J12+                                                                     AG
                      ____________________________________________________________
consensus             CGTGTCAGCAACCTCNTNTGCCNTANTACAATCGACGTGGACAAGTCGAGTGAGTCCGAG
 
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JMSF021H18+           GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
JMSF029A04+           GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
JMSF016J12+           GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
                      ____________________________________________________________
consensus             GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
 
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JMSF021H18+           CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
JMSF029A04+           CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCNC
JMFF023I08+                                                 AGGCGAGGGAGTGAAGCAGCAC
JMSF016J12+           CCAGGGACGAAGCNTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
                      ____________________________________________________________
consensus             CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
 
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JMSF021H18+           CGCGGAAGCNGACTCGATCCGGG                                     
JMSF029A04+           CGCGGAAGCCGACTCGATCCGGGCNTCAGNGAGGNGACTGAGAGGCACGTGGTNCACCAA
JMFF023I08+           CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
JMSF016J12+           CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
                      ____________________________________________________________
consensus             CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
 
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JMSF029A04+           AANGATNCCGGNCAAGCAGTCCTGCTCAAAGGCCGTGTCCTNGATGCAATTCAGAGTGAC
JMFF023I08+           AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
JMSF016J12+           AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
                      ____________________________________________________________
consensus             AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
 
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JMSF029A04+           CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
JMFF023I08+           CACTAGAGGCATTCTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
JMSF016J12+           CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
                      ____________________________________________________________
consensus             CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029A04+           AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
JMFF023I08+           AGATCTAGAAGACGACGACGATTGATTCTCTCTCNTCTTCATACTCATCGCGTATAATAA
JMSF016J12+           AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
                      ____________________________________________________________
consensus             AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF029A04+           CTTCTTNTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
JMFF023I08+           CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
JMSF016J12+           CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
                      ____________________________________________________________
consensus             CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
 
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JMSF029A04+           TGTAACGT                                                    
JMFF023I08+           TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
JMSF016J12+           TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
                      ____________________________________________________________
consensus             TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
 
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JMFF023I08+           AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCT   
JMSF016J12+           AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCTGCC
                      ____________________________________________________________
consensus             AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCTGCC