Contig 002177:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023I08Sequence439002177 (4)dbj|BAC58020.1|8e-40angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]751012303 (4)dbj|BAC58020.1|3e-112angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF016J12Sequence542002177 (4)dbj|BAC58020.1|2e-63angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]786012303 (4)dbj|BAC58020.1|6e-129angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF021H18Sequence287002177 (4)dbj|BAC58020.1|4e-34angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]299012303 (4)dbj|BAC58020.1|2e-60angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]
JMSF029A04Sequence468002177 (4)dbj|BAC58020.1|2e-60angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]743012303 (4)dbj|BAC58020.1|5e-113angustifolia [Ipomoea nil] dbj|BAC58021.1| angustifolia [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF021H18+ TGAACCGAGCCAACCGGAAGCGGA
                      ____________________________________________________________
consensus TGAACCGAGCCAACCGGAAGCGGA
 
. : . : . : . : . : . :
JMSF021H18+ TAAAGCATGCCTGGAGAGCAAATGCGTGCGGCGAAGTAAGCCAAGGATCAGAGCCATGAC
                      ____________________________________________________________
consensus TAAAGCATGCCTGGAGAGCAAATGCGTGCGGCGAAGTAAGCCAAGGATCAGAGCCATGAC
 
. : . : . : . : . : . :
JMSF021H18+ CGTGTCAGCAACCTCNTNTGCCNTANTACAATNGACGTGGACAAGTCGAGTGAGTCCGAG
JMSF029A04+ TACAATCGACGTGGACAAGTCGAGTGAGTCCGAG
JMSF016J12+ AG
                      ____________________________________________________________
consensus CGTGTCAGCAACCTCNTNTGCCNTANTACAATCGACGTGGACAAGTCGAGTGAGTCCGAG
 
. : . : . : . : . : . :
JMSF021H18+ GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
JMSF029A04+ GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
JMSF016J12+ GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
                      ____________________________________________________________
consensus GTCAGCGGCAAGGGCAGAATCAACAGCCCGATCAGAGGAGCCGAGGCAGAGGATGAGCTG
 
. : . : . : . : . : . :
JMSF021H18+ CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
JMSF029A04+ CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCNC
JMFF023I08+ AGGCGAGGGAGTGAAGCAGCAC
JMSF016J12+ CCAGGGACGAAGCNTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
                      ____________________________________________________________
consensus CCAGGGACGAAGCCTCCGCTGGGCGGCGCGTGGGAGGAAGGCGAGGGAGTGAAGCAGCAC
 
. : . : . : . : . : . :
JMSF021H18+ CGCGGAAGCNGACTCGATCCGGG
JMSF029A04+ CGCGGAAGCCGACTCGATCCGGGCNTCAGNGAGGNGACTGAGAGGCACGTGGTNCACCAA
JMFF023I08+ CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
JMSF016J12+ CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
                      ____________________________________________________________
consensus CGCGGAAGCCGACTCGATCCGGGCCTCAGCGAGGCGACTGAGAGGCACGTGGTCCACCAA
 
. : . : . : . : . : . :
JMSF029A04+ AANGATNCCGGNCAAGCAGTCCTGCTCAAAGGCCGTGTCCTNGATGCAATTCAGAGTGAC
JMFF023I08+ AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
JMSF016J12+ AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
                      ____________________________________________________________
consensus AACGATGCCGGCCAAGCAGTCCTGCTCAAAGGCCGTGTCCTCGATGCAATTCAGAGTGAC
 
. : . : . : . : . : . :
JMSF029A04+ CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
JMFF023I08+ CACTAGAGGCATTCTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
JMSF016J12+ CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
                      ____________________________________________________________
consensus CACTAGAGGCATTTTCTGCTTCTCAAGCGTAGGGTTGTTCGGGAGCTCCATTGGCGCTGG
 
. : . : . : . : . : . :
JMSF029A04+ AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
JMFF023I08+ AGATCTAGAAGACGACGACGATTGATTCTCTCTCNTCTTCATACTCATCGCGTATAATAA
JMSF016J12+ AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
                      ____________________________________________________________
consensus AGATCTAGAAGACGACGACGATTGATTCTCTCTCTTCTTCATACTCATCGCGTATAATAA
 
. : . : . : . : . : . :
JMSF029A04+ CTTCTTNTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
JMFF023I08+ CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
JMSF016J12+ CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
                      ____________________________________________________________
consensus CTTCTTCTACACACACACACTCTCTCTCTCCCTCTCTATATCACACCGTATGCAGTAGTG
 
. : . : . : . : . : . :
JMSF029A04+ TGTAACGT
JMFF023I08+ TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
JMSF016J12+ TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
                      ____________________________________________________________
consensus TGTAACGTAATTGCTCTTCCCCAGAGCTTCGAGAGAAAAGGGAAGAGAAAGCACGGGTTG
 
. : . : . : . : . : . :
JMFF023I08+ AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCT
JMSF016J12+ AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCTGCC
                      ____________________________________________________________
consensus AAATGAGTCGTGGAGCAGGAGATGGACCCTAGTCTTCCCTCCCTTCTCTCCCCACCTGCC