Contig 002174:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+                                    AGTTGCAAAATGATGTCATTCATTTGACTTTAAAA
                      ____________________________________________________________
consensus                                      AGTTGCAAAATGATGTCATTCATTTGACTTTAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           GGTAGAATAAACCTTNTAACGGATATATCATACTGTATTAACTAAGTCACGTAGCTACAT
rJMSF016A03-                            ACGGATATATCATACTGTATTAACTAAGTCACGTAGCTACAT
                      ____________________________________________________________
consensus             GGTAGAATAAACCTTNTAACGGATATATCATACTGTATTAACTAAGTCACGTAGCTACAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           AGCTACACTGACCGCTAATCAGTAATCATACACACAACATATGACCACGTAAACGGGTCG
rJMSF016A03-          AGCTACACTGACCGCTAATCAGTAATCATACACACAACATATGACCACGTAAACGGGTCG
                      ____________________________________________________________
consensus             AGCTACACTGACCGCTAATCAGTAATCATACACACAACATATGACCACGTAAACGGGTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           GTTATTCCAATTACAATACGCTGATAAAACCACTCAGCAGTTCATGGATAAGAGATACAC
rJMSF016A03-          GTTATTCCAATTACAATACGCTGATAAAACCACTCAGCAGTTCATAGATAAGAGATACAC
                      ____________________________________________________________
consensus             GTTATTCCAATTACAATACGCTGATAAAACCACTCAGCAGTTCATGGATAAGAGATACAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           CAGAAAATAACGGGAGGTGAATAGCAGAAGTTGGAAATGAACGAGAGTTTACTTGTTTGG
rJMSF016A03-          CAGAAAATAACGGGAGGTGAATAGCAGAAGTTGGAAATGAACGAGAGTTTACTTGTTTGG
                      ____________________________________________________________
consensus             CAGAAAATAACGGGAGGTGAATAGCAGAAGTTGGAAATGAACGAGAGTTTACTTGTTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           CTTGTAATCATGTCCCTAATTCCCCCCTGGATGCTGTCGTGACATCATATGCTCAGACTT
rJMSF016A03-          CTTGTAATCATGTCCCTAATTCCCCCCTGGATGCTGTCGTGACATCATATGCTCAGACTT
                      ____________________________________________________________
consensus             CTTGTAATCATGTCCCTAATTCCCCCCTGGATGCTGTCGTGACATCATATGCTCAGACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           CTGCTCGGTGTATGGCAAGTATTTCCCGTCAAATGTCACAACGGCACGATCTTTTCCATC
rJMSF016A03-          CTGCTCGGTGTATGGCAAGTATTTCCCGTCAAATGTCACAACGGCACGATCTTTTCCATC
                      ____________________________________________________________
consensus             CTGCTCGGTGTATGGCAAGTATTTCCCGTCAAATGTCACAACGGCACGATCTTTTCCATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           TACACCTTTTACTTTATCAACCGAGCAGTAGAAGTCTATAGCTGACATGATGCCATCTCC
rJMSF016A03-          TACACCTTTTACTTTATCAACCGAGCAGTAGAAGTCTATAGCTGACATGATGCCATCTCC
                      ____________________________________________________________
consensus             TACACCTTTTACTTTATCAACCGAGCAGTAGAAGTCTATAGCTGACATGATGCCATCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           AAATTCCTCATTAATAATTTCCTTAATGCTCTCCCCAAAATGCATAACAGCTTCATTCAA
rJMSF016A03-          AAATTCCTCATTAATAATTTCCTTAATGCTCTCCCCAAAATGCATAACAGCTTCATTCAA
                      ____________________________________________________________
consensus             AAATTCCTCATTAATAATTTCCTTAATGCTCTCCCCAAAATGCATAACAGCTTCATTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           TCTGTAAACAGTGGGCTCTTGGATAAGATTGGGATCGTAGGACCTCATGGGAGGGCGCAT
rJMSF016A03-          TCTGTAAACAGTGGGCTCTTGGATAAGATTGGGATCGTAGGACCTCATGGGAGGGCGCAT
                      ____________________________________________________________
consensus             TCTGTAAACAGTGGGCTCTTGGATAAGATTGGGATCGTAGGACCTCATGGGAGGGCGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035I05+           CATTTCTT                                                    
rJMSF016A03-          CATTTCTTGAATTTGATGATCGACCAGGCTGGGCAGCGCTTCCCGGAGCTTGGGGACAGT
JMSF016A03+                        TGATGATCGACCAGGCTGGGCAGCGCTTCCCGGAGCTTGGGGACAGT
                      ____________________________________________________________
consensus             CATTTCTTGAATTTGATGATCGACCAGGCTGGGCAGCGCTTCCCGGAGCTTGGGGACAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016A03-          CTCGGGCTTGAGCTGGGCCTGGCGTTTCAAGAGCTGAGCTACATAGACGTTGGTCAGACC
JMSF016A03+           CTCGGGCTTGAGCTGGGCCTGGCGTTTCAAGAGCTGAGCTACATAGACGTTGGTCAGACC
                      ____________________________________________________________
consensus             CTCGGGCTTGAGCTGGGCCTGGCGTTTCAAGAGCTGAGCTACATAGACGTTGGTCAGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016A03-          GGTCTCCGCCGCAATCTGACTGTAAGTCTTGCCGGAATTCCGCCGCACGTCCTGTAGCGA
JMSF016A03+           GGTCTCCGCCGCAATCTGACTGTAAGTCTTGCCGGAATTCCGCCGCACGTCCTGTAGCGA
                      ____________________________________________________________
consensus             GGTCTCCGCCGCAATCTGACTGTAAGTCTTGCCGGAATTCCGCCGCACGTCCTGTAGCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF016A03-          CGCCACCAAGCTCGATTGGCTGCTATGCTTATCCATGCTTGATCACAAAATNAGTGTCTC
JMSF016A03+           CGCCACCAAGCTCGATTGGCTGCTATGCTTATCCATGCTTGATCACAAAATTAGTGTCTC
                      ____________________________________________________________
consensus             CGCCACCAAGCTCGATTGGCTGCTATGCTTATCCATGCTTGATCACAAAATTAGTGTCTC