Contig 002164:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF015C20-                                                                    AA
rJMSF024N19-                                                        GCCTGGGAACTAAA
                      ____________________________________________________________
consensus                                                           GCCTGGGAACTAAA
 
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rJMSF015C20-          CTAAAAAGGAACACAAGGAATCCAGCATAAGGATACTATAATATTAAGGTAGAAAACTAA
rJMSF024N19-          CTAAAAAGGAACACAAGGAATCCAGCATAAGGATACTATAATATTAAGGTAGAAAACTAA
                      ____________________________________________________________
consensus             CTAAAAAGGAACACAAGGAATCCAGCATAAGGATACTATAATATTAAGGTAGAAAACTAA
 
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rJMSF015C20-          GGGAAGATTTCGACATCAACTTGACTCATTAAACCGATTTCCCTTTCTTCCGAGGTTATC
rJMSF024N19-          GGGAAGATTTCGACATCAACTTGACTCATTAAACCGATTTCCCTTTCTTCCGAGGTTATC
                      ____________________________________________________________
consensus             GGGAAGATTTCGACATCAACTTGACTCATTAAACCGATTTCCCTTTCTTCCGAGGTTATC
 
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rJMSF015C20-          TCTATCTATATTACAAGTACCAAACTCTCTCCTACTTTAAAGCTCAATGCAGAAAAATGC
rJMSF024N19-          TCTATCTATATTACAAGTACCAAACTCTCTCCTACTTTAAAGCTCAATGCAGAAAAATGC
                      ____________________________________________________________
consensus             TCTATCTATATTACAAGTACCAAACTCTCTCCTACTTTAAAGCTCAATGCAGAAAAATGC
 
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rJMSF015C20-          TTGCTGCATACATTCACATTACCATCCCACCATCAATAGTGAACACCTGACCAGTAATAT
rJMSF024N19-          TTGCTGCATACATTCACATTACCATCCCACCATCAATAGTGAACACCTGACCAGTAATAT
                      ____________________________________________________________
consensus             TTGCTGCATACATTCACATTACCATCCCACCATCAATAGTGAACACCTGACCAGTAATAT
 
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rJMSF015C20-          AACTGGCAGCTGGATTGACTGCCAGAAATTCCACTAGCCCAGCCACTTCTTCCGGTTGAC
rJMSF024N19-          AACTGGCAGCTGGATTGACTGCCAGAAATTCCACTAGCCCAGCCACTTCTTCCGGTTGAC
                      ____________________________________________________________
consensus             AACTGGCAGCTGGATTGACTGCCAGAAATTCCACTAGCCCAGCCACTTCTTCCGGTTGAC
 
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rJMSF015C20-          CATATCGTCCTAAGGGAATAGTGCCAAGAATTTTCTTTTCAATGTCTTCACCAAGCATGG
rJMSF024N19-          CATATCGTCCTAAGGGAATAGTGCCAAGAATTTTCTTTTCAATGTCTTCACCAAGCATGG
                      ____________________________________________________________
consensus             CATATCGTCCTAAGGGAATAGTGCCAAGAATTTTCTTTTCAATGTCTTCACCAAGCATGG
 
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rJMSF015C20-          CTGTCATATCAGATGCAATAAATCCAGGAGCCACAGCATTAACAGTTATATTCCTGCTGG
rJMSF024N19-          CTGTCATATCAGATGCAATAAATCCAGGAGCCACAGCATTAACAGTTATATTCCTGCTGG
                      ____________________________________________________________
consensus             CTGTCATATCAGATGCAATAAATCCAGGAGCCACAGCATTAACAGTTATATTCCTGCTGG
 
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rJMSF015C20-          CATATTCTTTTGCTACACTCTTGGTTAAGCCAATGACTCCTGCTTTTGCAGCACTGTAAT
rJMSF024N19-          CATATTCTTTTGCTACACTCTTGGTTAAGCCAATGACTCCTGCTTTTGCAGCACTGTAAT
                      ____________________________________________________________
consensus             CATATTCTTTTGCTACACTCTTGGTTAAGCCAATGACTCCTGCTTTTGCAGCACTGTAAT
 
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rJMSF015C20-          TGGCTTGGCCAGAATTCCCAACCAAGCCAACAACAGAAGCTATGTTAATGATTCTTCCCT
rJMSF024N19-          TGGCTTGGCCAGAATTCCCAACCAAGCCAACAACAGAAGCTATGTTAATGATTCTTCCCT
                      ____________________________________________________________
consensus             TGGCTTGGCCAGAATTCCCAACCAAGCCAACAACAGAAGCTATGTTAATGATTCTTCCCT
 
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rJMSF015C20-          TTTTCTTCTTAATCATAATTTTAGCTGCCGCCTGTGTACAGAGAAAAACCCCAGTCAGGT
rJMSF024N19-          TTTTCTTCTTAATCATAATTTTAGCTGCCGCCTGTGTACAGAGAAAAACCCCAGTCAGGT
                      ____________________________________________________________
consensus             TTTTCTTCTTAATCATAATTTTAGCTGCCGCCTGTGTACAGAGAAAAACCCCAGTCAGGT
 
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rJMSF015C20-          TCAAATCAATAACCTCCTGCCATTGGGACTTCTTCATTCTCATCAACAAACCATCACGGG
rJMSF024N19-          TCAAATCAATAACCTCCTGCCATTGGGACTTCTTCATTCTCATCAACAAACCATCACGGG
JMSF052D10+                                                                    GGG
                      ____________________________________________________________
consensus             TCAAATCAATAACCTCCTGCCATTGGGACTTCTTCATTCTCATCAACAAACCATCACGGG
 
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rJMSF015C20-          TGATTCCAGCATTATTTATCAATATATCAACTGTTCCCCATCGATCAATTACACTCTTAA
rJMSF024N19-          TGATTCCAGCATTATTTATCAATATATCAACTGTTCCCCATCGATCAATTACACTCTTAA
JMSF052D10+           TGATTCCAGCATTATTTATCAATATATCAACTGTTCCCCATCGATCAATTACACTCTTAA
                      ____________________________________________________________
consensus             TGATTCCAGCATTATTTATCAATATATCAACTGTTCCCCATCGATCAATTACACTCTTAA
 
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rJMSF015C20-          TCATTGACTCTACATCATCTTCTTTTGAAACATCACACCCAAAAGC              
rJMSF024N19-          TCATTGACTCTACATCATCTTCTTTTGAAACATCACACCCNAAAGCAAAAGCTTGGC   
JMSF052D10+           TCATTGACTCTACATCATCTTCTTTTGAAACATCACACCCAAAAGCAAAAGCTTGGCCGC
JMSF024N19+                                  TTTGAAACATCACACCCAAAAGCAAAAGCTTGGCCGC
                      ____________________________________________________________
consensus             TCATTGACTCTACATCATCTTCTTTTGAAACATCACACCCAAAAGCAAAAGCTTGGCCGC
 
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JMSF052D10+           CACTTGCTTCAATCTCTTTGGAAACATCTTCTGCCTCCTTGGAAGATCTAGCATAGTTCA
JMSF024N19+           CACTTGCTTCAATCTCTTTGGAAACATCTTCTGCCTCCTTGGAAGATCTAGCATAGTTCA
                      ____________________________________________________________
consensus             CACTTGCTTCAATCTCTTTGGAAACATCTTCTGCCTCCTTGGAAGATCTAGCATAGTTCA
 
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JMSF052D10+           CCAAGACCTTGCAACCAGCCTTTCCCAAAGCCAAAGCAATTGCCTTCCCAATTCCACGAG
JMSF024N19+           CCAAGACCTTGCAACCAGCCTTTCCCAAAGCCAAAGCAATTGCCTTCCCAATTCCACGAG
JMSF015C20+                                                                   CGAG
                      ____________________________________________________________
consensus             CCAAGACCTTGCAACCAGCCTTTCCCAAAGCCAAAGCAATTGCCTTCCCAATTCCACGAG
 
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JMSF052D10+           AAGCACCGGTCACAATGACGACTGGAGTTTCAACTTTCGCGGTAGCATTGGTCCCTGCTT
JMSF024N19+           AAGCACCGGTCACAATGACGACTGGAGTTTCAACTTTCGCGGTAGCATTGGTCCCTGCTT
JMSF015C20+           AAGCACCGGTCACAATGACGACTGGAGTTTCAACTTTCGCGGTAGCATTGGTCCCTGCTT
                      ____________________________________________________________
consensus             AAGCACCGGTCACAATGACGACTGGAGTTTCAACTTTCGCGGTAGCATTGGTCCCTGCTT
 
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JMSF052D10+           GCTCTGTAGCCGCCACCTGAGCTCTCACACCTGAGATGGGAGGAGAAGAGGAAGAGGAAG
JMSF024N19+           GCTCTGTAGCCGCCACCTGAGCTCTCACACCTGAGATGGGAGGAGAAGAGGAAGAGGAAG
JMSF015C20+           GCTCTGTAGCCGCCACCTGAGCTCTCACACCTGAGATGGGAGGAGAAGAGGAAGAGGAAG
                      ____________________________________________________________
consensus             GCTCTGTAGCCGCCACCTGAGCTCTCACACCTGAGATGGGAGGAGAAGAGGAAGAGGAAG
 
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JMSF052D10+           AGGAAGAGGACCAGCGGCATTGCAACGAAAGAGGAGGTGATTGGAAGGGGGCGTAAGAGA
JMSF024N19+           AGGAAGAGGACCAGCGGCATTGCAACGAAAGAGGAGGTGATTGGAAGGGGGCGTAAGAGA
JMSF015C20+           AGGAAGAGGACCAGCGGCATTGCAACGAAAGAGGAGGTGATTGGAAGGGGGCGTAAGAGA
                      ____________________________________________________________
consensus             AGGAAGAGGACCAGCGGCATTGCAACGAAAGAGGAGGTGATTGGAAGGGGGCGTAAGAGA
 
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JMSF052D10+           GGCGTAGAAGGGAAAGTTGATGGCGGGCAGAGGCGGAGATTTTGGTGATGCCGCGGGCAG
JMSF024N19+           GGCGTAGAAGGGAAAGTTGATGGCGGGCAGAGGCGGAGATTTTGGTGATGCCGCGGGCAG
JMSF015C20+           GGCGTAGAAGGGAAAGTTGATGGCGGGCAGAGGCGGAGATTTTGGTGATGCCGCGGGCAG
                      ____________________________________________________________
consensus             GGCGTAGAAGGGAAAGTTGATGGCGGGCAGAGGCGGAGATTTTGGTGATGCCGCGGGCAG
 
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JMSF052D10+           TGACGGAGTTGACGGCGATTGAAGCCATAAATCGGGGTAGAGTCGCCAGCTATATAACTG
JMSF024N19+           TGACGGAGTTGACGGCGATTGAAGCCATAAATCGGGGTAGAGTCGCCAGCTATATAACTG
JMSF015C20+           TGACGGAGTTGACGGCGATTGAAGCCATAAATCGGGGTAGAGTCGCCAGCTATATAACTG
                      ____________________________________________________________
consensus             TGACGGAGTTGACGGCGATTGAAGCCATAAATCGGGGTAGAGTCGCCAGCTATATAACTG
 
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JMSF052D10+           AAGAAGCAATTGAGGGATAAGCGTAAGGAGCGCAACTCAGTGTCAATTGTTCTCCGATGG
JMSF024N19+           AAGAAGCAATTGAGGGATAAGCGTAAGGAGCGCAACTCAGTGTCAATTGTTCTCCGATGG
JMSF015C20+           AAGAAGCAATTGAGGGATAAGCGTAAGGAGCGCAACTCAGTGTCAATTGTTCTCCGATGG
                      ____________________________________________________________
consensus             AAGAAGCAATTGAGGGATAAGCGTAAGGAGCGCAACTCAGTGTCAATTGTTCTCCGATGG
 
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JMSF052D10+           ATGGTTGTAGTTTCCGGCCAAAGCTCGCCGGTTGGGGAGAAGCGGAGAGAGAAGAAATGG
JMSF024N19+           ATGGTTGTAGTTTCCGGCCAAAGCTCGCCGGTTGGGGAGAAGCGGAGAGAGAAGAAATGG
JMSF015C20+           ATGGTTGTAGTTTCCGGCCAAAGCTCGCCGGTTGGGGAGAAGCGGAGAGAGAAGAAATGG
                      ____________________________________________________________
consensus             ATGGTTGTAGTTTCCGGCCAAAGCTCGCCGGTTGGGGAGAAGCGGAGAGAGAAGAAATGG
 
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JMSF052D10+           AGAAGAACACCTAGCAGCCC                                        
JMSF024N19+           AGAAGAACACCTAGCAGCCCGGGTTGAATTTTAGT                         
JMSF015C20+           AGAAGAACACCTAGCAGCCCGGGTTGAATTTTAGTGGAAGACTTTACCAAAATAATGCCC
                      ____________________________________________________________
consensus             AGAAGAACACCTAGCAGCCCGGGTTGAATTTTAGTGGAAGACTTTACCAAAATAATGCCC