Contig 002163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015L18Sequence642002163 (4)ref|XP_010320915.1|2e-74PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.
JMFN046A13Sequence629002163 (4)ref|XP_010320915.1|2e-87PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.
JMSF015C05Sequence440002163 (4)ref|XP_006348747.1|8e-54PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Solanum tuberosum] ref751002163 (4)ref|XP_010320915.1|6e-110PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.

Alignment

This contig is upended


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JMFN015L18+                                                      AACTCAGAATACACACC
                      ____________________________________________________________
consensus                                                        AACTCAGAATACACACC
 
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JMFN015L18+           AGCATTCATTCAGCAAGCAGATACAAGTNCAATATCAGAGCAAAAAGCCGNAAGTGTTGT
rJMSF015C05-                                                                  TTGT
                      ____________________________________________________________
consensus             AGCATTCATTCAGCAAGCAGATACAAGTNCAATATCAGAGCAAAAAGCCGNAAGTGTTGT
 
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JMFN015L18+           AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
rJMSF015C05-          AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
                      ____________________________________________________________
consensus             AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
 
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JMFN015L18+           AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
rJMSF015C05-          AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
                      ____________________________________________________________
consensus             AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
 
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JMFN015L18+           CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
rJMSF015C05-          CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
                      ____________________________________________________________
consensus             CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
 
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JMFN015L18+           CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
rJMSF015C05-          CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
JMFN046A13+                                     TTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
                      ____________________________________________________________
consensus             CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
 
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JMFN015L18+           GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
rJMSF015C05-          GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
JMFN046A13+           GGTGGAGGTCTTCAAGAATGANGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
                      ____________________________________________________________
consensus             GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
 
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JMFN015L18+           TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
rJMSF015C05-          TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
JMFN046A13+           TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
                      ____________________________________________________________
consensus             TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
 
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JMFN015L18+           TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
rJMSF015C05-          TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
JMFN046A13+           TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
JMSF015C05+                                                   CAGTAATGCATCATGAGCAG
                      ____________________________________________________________
consensus             TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
 
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JMFN015L18+           CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
rJMSF015C05-          CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
JMFN046A13+           CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
JMSF015C05+           CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
                      ____________________________________________________________
consensus             CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
 
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JMFN015L18+           ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
rJMSF015C05-          ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
JMFN046A13+           ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
JMSF015C05+           ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
                      ____________________________________________________________
consensus             ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
 
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JMFN015L18+           CCTCAAGGTCCATTTTCCGAATCAG                                   
rJMSF015C05-          CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
JMFN046A13+           CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
JMSF015C05+           CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
                      ____________________________________________________________
consensus             CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
 
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rJMSF015C05-          TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
JMFN046A13+           TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
JMSF015C05+           TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
                      ____________________________________________________________
consensus             TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
 
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rJMSF015C05-          ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
JMFN046A13+           ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
JMSF015C05+           ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
                      ____________________________________________________________
consensus             ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
 
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rJMSF015C05-          CTTGCTTAATTCA                                               
JMFN046A13+           CTTGCTTAATTCAATTCCACCTGA                                    
JMSF015C05+           CTTGCTTAATTCAATTCCACCTGAAATGGTAGGAATTGTGAACAGACCCGAGAAAACTCA
                      ____________________________________________________________
consensus             CTTGCTTAATTCAATTCCACCTGAAATGGTAGGAATTGTGAACAGACCCGAGAAAACTCA
 
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JMSF015C05+           GAGAAGAACGAGTTGACTGTGGCTTGACTCAGTTGCCGCAAAAGAAAAATGCTTGTCACC
                      ____________________________________________________________
consensus             GAGAAGAACGAGTTGACTGTGGCTTGACTCAGTTGCCGCAAAAGAAAAATGCTTGTCACC