Contig 002163:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015L18Sequence642002163 (4)ref|XP_010320915.1|2e-74PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.
JMFN046A13Sequence629002163 (4)ref|XP_010320915.1|2e-87PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.
JMSF015C05Sequence440002163 (4)ref|XP_006348747.1|8e-54PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Solanum tuberosum] ref751002163 (4)ref|XP_010320915.1|6e-110PREDICTED: vesicle transport v-SNARE 12 [Solanum lycopersicum] ref|XP_010320916.

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN015L18+ AACTCAGAATACACACC
                      ____________________________________________________________
consensus AACTCAGAATACACACC
 
. : . : . : . : . : . :
JMFN015L18+ AGCATTCATTCAGCAAGCAGATACAAGTNCAATATCAGAGCAAAAAGCCGNAAGTGTTGT
rJMSF015C05- TTGT
                      ____________________________________________________________
consensus AGCATTCATTCAGCAAGCAGATACAAGTNCAATATCAGAGCAAAAAGCCGNAAGTGTTGT
 
. : . : . : . : . : . :
JMFN015L18+ AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
rJMSF015C05- AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
                      ____________________________________________________________
consensus AAACGATGAAAATATGTACAACCAAATATAGCAGTGAAGATCATGGAGTTCATTAATGGG
 
. : . : . : . : . : . :
JMFN015L18+ AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
rJMSF015C05- AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
                      ____________________________________________________________
consensus AAAGCTTAAAATACAGGACAATGATGATAGCTAGGACAAGAGCAGCAATTATGCCACCGA
 
. : . : . : . : . : . :
JMFN015L18+ CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
rJMSF015C05- CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
                      ____________________________________________________________
consensus CAATCATCTTGTTACGGCTGATGCGTCTGGACATGGAGGTCAAGACCTTCTTGCTCTTGT
 
. : . : . : . : . : . :
JMFN015L18+ CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
rJMSF015C05- CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
JMFN046A13+ TTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
                      ____________________________________________________________
consensus CAATGGCGTCATCCACACCATGAAGCTTGTTATGGGAATGTAATAGCGTTTGGCGCTGCT
 
. : . : . : . : . : . :
JMFN015L18+ GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
rJMSF015C05- GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
JMFN046A13+ GGTGGAGGTCTTCAAGAATGANGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
                      ____________________________________________________________
consensus GGTGGAGGTCTTCAAGAATTGAGATGCCAAGGTCCTCTGTCTCTAAAGCAACCCTCCGGC
 
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JMFN015L18+ TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
rJMSF015C05- TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
JMFN046A13+ TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
                      ____________________________________________________________
consensus TCTCCTTGATTCTCTCGCTGGAATCATTCAGCCTCTCGGTTGACATTGCCAATCGCCCCC
 
. : . : . : . : . : . :
JMFN015L18+ TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
rJMSF015C05- TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
JMFN046A13+ TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
JMSF015C05+ CAGTAATGCATCATGAGCAG
                      ____________________________________________________________
consensus TTTGATTTGAAGCCGCATGTGCATCTGCCATTTCACCCTCCAGTAATGCATCATGAGCAG
 
. : . : . : . : . : . :
JMFN015L18+ CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
rJMSF015C05- CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
JMFN046A13+ CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
JMSF015C05+ CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
                      ____________________________________________________________
consensus CTTGATTAGAGCTACTAGACGTTAGTTTTTTCACTTCCCTTTTCAACATATTAAGGTCCG
 
. : . : . : . : . : . :
JMFN015L18+ ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
rJMSF015C05- ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
JMFN046A13+ ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
JMSF015C05+ ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
                      ____________________________________________________________
consensus ATTTATACTCCCTTAGCTTGGCAAGAAGCACAGCTTTTAAACTCGGTTGCAAACTCCTCG
 
. : . : . : . : . : . :
JMFN015L18+ CCTCAAGGTCCATTTTCCGAATCAG
rJMSF015C05- CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
JMFN046A13+ CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
JMSF015C05+ CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
                      ____________________________________________________________
consensus CCTCAAGGTCCATTTTCCGAATCAGCACATCCGCTTCATCCAATCCCACCGTGAGCTCGG
 
. : . : . : . : . : . :
rJMSF015C05- TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
JMFN046A13+ TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
JMSF015C05+ TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
                      ____________________________________________________________
consensus TAACCTGCTGCTTCCTAGGCTCTCCGATGGGGAGAAGAGCAGCAGAGCTGCATTTCTTAG
 
. : . : . : . : . : . :
rJMSF015C05- ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
JMFN046A13+ ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
JMSF015C05+ ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
                      ____________________________________________________________
consensus ACAAATTAACGGACAGCTCACAGTACTGTCTCTCGTATCCTTCAAACACCTCACTCATCT
 
. : . : . : . : . : . :
rJMSF015C05- CTTGCTTAATTCA
JMFN046A13+ CTTGCTTAATTCAATTCCACCTGA
JMSF015C05+ CTTGCTTAATTCAATTCCACCTGAAATGGTAGGAATTGTGAACAGACCCGAGAAAACTCA
                      ____________________________________________________________
consensus CTTGCTTAATTCAATTCCACCTGAAATGGTAGGAATTGTGAACAGACCCGAGAAAACTCA
 
. : . : . : . : . : . :
JMSF015C05+ GAGAAGAACGAGTTGACTGTGGCTTGACTCAGTTGCCGCAAAAGAAAAATGCTTGTCACC
                      ____________________________________________________________
consensus GAGAAGAACGAGTTGACTGTGGCTTGACTCAGTTGCCGCAAAAGAAAAATGCTTGTCACC