Contig 002162:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014N15Sequence484002162 (2)ref|XP_004242359.1|1e-08PREDICTED: myb-related protein Myb4-like [Solanum lycopersicum]217012707 (2)
JMSF039E12Sequence680002162 (2)ref|XP_011080037.1|1e-32PREDICTED: chromatin modification-related protein MEAF6-like [Sesamum indicum]692012707 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF039E12+ TAAAAGTGTAGTGCTTTTCGATGATG
                      ____________________________________________________________
consensus TAAAAGTGTAGTGCTTTTCGATGATG
 
. : . : . : . : . : . :
JMSF039E12+ ACAGAAACCCTTCAAAACCTTTCAACACATTCCCACATTGGCTTGGATCCTGCAAATAAC
                      ____________________________________________________________
consensus ACAGAAACCCTTCAAAACCTTTCAACACATTCCCACATTGGCTTGGATCCTGCAAATAAC
 
. : . : . : . : . : . :
JMSF039E12+ TCGTCTCCATGTCGTAAACCTGCTTCTCAATGCTCTTGAGCTCCTCGTGAAGCTTGCCTC
                      ____________________________________________________________
consensus TCGTCTCCATGTCGTAAACCTGCTTCTCAATGCTCTTGAGCTCCTCGTGAAGCTTGCCTC
 
. : . : . : . : . : . :
JMSF039E12+ GTTTCGACAAGATAGCGGCGAGCACTGCCGAAGGGTTCGAAGGCGTCCGTTGCCCTACGA
JMSF014N15+ ACGA
                      ____________________________________________________________
consensus GTTTCGACAAGATAGCGGCGAGCACTGCCGAAGGGTTCGAAGGCGTCCGTTGCCCTACGA
 
. : . : . : . : . : . :
JMSF039E12+ TGCATTTTGTTACGCAGATTCAAAGTTTGTGTTGCGATTGTTACATAGCATTACGAAAGA
JMSF014N15+ TGCATTTTGTTACGCAGATTCAAAGTTTGTGTTGCGATTGTTACATAGCATTACGAAAGA
                      ____________________________________________________________
consensus TGCATTTTGTTACGCAGATTCAAAGTTTGTGTTGCGATTGTTACATAGCATTACGAAAGA
 
. : . : . : . : . : . :
JMSF039E12+ TCGCCATAGACACACACATATGTAAAACATTCAGACAGTGCGGTTGAAGGTTACCTTCCG
JMSF014N15+ TCGCCATAGACACACACATATGTAAAACATTCAGACAGTGCGGTTGAAGGTTACCTTCCG
                      ____________________________________________________________
consensus TCGCCATAGACACACACATATGTAAAACATTCAGACAGTGCGGTTGAAGGTTACCTTCCG
 
. : . : . : . : . : . :
JMSF039E12+ CGTCCATTATCCCCAGGGACGGAGCCAGGATTTCTGAGTAGTGAGTACTAGGAGGACTGA
JMSF014N15+ CGTCCATTATCCCCAGGGACGGAGCCAGGATTTCTGAGTAGTGAGTACTAGGAGGACTGA
                      ____________________________________________________________
consensus CGTCCATTATCCCCAGGGACGGAGCCAGGATTTCTGAGTAGTGAGTACTAGGAGGACTGA
 
. : . : . : . : . : . :
JMSF039E12+ GGAGACGAGTTTCCGATCACGAGGGGCGCTGAGAGGCGGTGTTGGCGTGTTGCCTGAAGC
JMSF014N15+ GGAGACGAGTTTCCGATCACGAGGGGCGCTGAGAGGCGGTGTTGGCGTGTTGCCTGAAGC
                      ____________________________________________________________
consensus GGAGACGAGTTTCCGATCACGAGGGGCGCTGAGAGGCGGTGTTGGCGTGTTGCCTGAAGC
 
. : . : . : . : . : . :
JMSF039E12+ CGGTAGGCCGGGACGGAGATGCGCCGGAAGCTGGTAGCGGCGCTGCGGCAGAGAGTCAGA
JMSF014N15+ CGGTAGGCCGGGACGGAGATGCGCCGGAAGCTGGTAGCGGCGCTGCGGCAGAGAGTCAGA
                      ____________________________________________________________
consensus CGGTAGGCCGGGACGGAGATGCGCCGGAAGCTGGTAGCGGCGCTGCGGCAGAGAGTCAGA
 
. : . : . : . : . : . :
JMSF039E12+ GACGAAGACAGAAGCAACGCACCTCACGCACGATCTATCTGCTACCCCCTCTCCCTCCGT
JMSF014N15+ GACGAAGACAGAAGCAACGCACCTCACGCACGATCTATCTGCTACCCCCTCTCCCTCCGT
                      ____________________________________________________________
consensus GACGAAGACAGAAGCAACGCACCTCACGCACGATCTATCTGCTACCCCCTCTCCCTCCGT
 
. : . : . : . : . : . :
JMSF039E12+ CCCTGATTATCGCGTGCAGAGTTGCAGACTCCGATGGAAAAATTACCTGCGACCGGACAT
JMSF014N15+ CCCTGATTATCGCGTGCAGAGTTGCAGACTCCGATGGAAAAATTACCTGCGACCGGACAT
                      ____________________________________________________________
consensus CCCTGATTATCGCGTGCAGAGTTGCAGACTCCGATGGAAAAATTACCTGCGACCGGACAT
 
. : . : . : . : . : . :
JMSF039E12+ CAAACGATGAAACTTCAGCCATGAAGAAGAAGACGCCATCATCAAGCTGTA
JMSF014N15+ CAAACGATGAAACTTCAGCCATGAAGAAGAAGACGCCATCATCAAGCTGTATCAAGCTCC
                      ____________________________________________________________
consensus CAAACGATGAAACTTCAGCCATGAAGAAGAAGACGCCATCATCAAGCTGTATCAAGCTCC