| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018B11 | Sequence | 606 | 002158 (4) | emb|CDP12183.1| | 3e-17 | unnamed protein product [Coffea canephora] | 786 | 006836 (5) | ref|XP_009764747.1| | 2e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
| JMSF011D02 | Sequence | 366 | 002158 (4) | ref|XP_006343828.1| | 6e-08 | PREDICTED: auxin response factor 9-like [Solanum tuberosum] | 727 | 006836 (5) | ref|XP_009764747.1| | 2e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
| JMSF014F22 | Sequence | 229 | 002158 (4) | 829 | 006836 (5) | ref|XP_009764747.1| | 4e-47 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] | |||
| JMSF044A07 | Sequence | 782 | 002158 (4) | ref|XP_006343828.1| | 5e-52 | PREDICTED: auxin response factor 9-like [Solanum tuberosum] | 693 | 006836 (5) | ref|XP_009764747.1| | 2e-45 | PREDICTED: auxin response factor 9-like isoform X1 [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMSF044A07+ TC
____________________________________________________________
consensus TC
. : . : . : . : . : . :
JMSF044A07+ AGTAGCGTGTCTCCTTAGAACAGAAAACCCGCCATGAGGGCTTGTATNTGATGCGGTTAG
____________________________________________________________
consensus AGTAGCGTGTCTCCTTAGAACAGAAAACCCGCCATGAGGGCTTGTATNTGATGCGGTTAG
. : . : . : . : . : . :
JMSF044A07+ AACCTTGCAGAACGAGTGAATTTTGGGGCTTGGAGGCTCAGGGGGGCATGGATTCGGATT
____________________________________________________________
consensus AACCTTGCAGAACGAGTGAATTTTGGGGCTTGGAGGCTCAGGGGGGCATGGATTCGGATT
. : . : . : . : . : . :
JMSF044A07+ AGTTGCCTTCATTTGCTCTTCTGGCATCAAAGTAATTTGGGCATAAACCTCATCAGTGTC
____________________________________________________________
consensus AGTTGCCTTCATTTGCTCTTCTGGCATCAAAGTAATTTGGGCATAAACCTCATCAGTGTC
. : . : . : . : . : . :
JMSF044A07+ CCGTTCAGCCAGAAGGTGAATGTTTAAAACACGGCAAAGGATCTTCGACTGCAGAGGAAA
____________________________________________________________
consensus CCGTTCAGCCAGAAGGTGAATGTTTAAAACACGGCAAAGGATCTTCGACTGCAGAGGAAA
. : . : . : . : . : . :
JMSF044A07+ CATTGATATCCTCTGATCCATCGCTTGATTTGTCGATGCCTCCAATTGTTCCATGTGACC
____________________________________________________________
consensus CATTGATATCCTCTGATCCATCGCTTGATTTGTCGATGCCTCCAATTGTTCCATGTGACC
. : . : . : . : . : . :
JMSF044A07+ TTGTGGAAAATAGTAAACCCATTCATCAGGTCTAGGAACATCCACCAATGGACCCGCGCA
____________________________________________________________
consensus TTGTGGAAAATAGTAAACCCATTCATCAGGTCTAGGAACATCCACCAATGGACCCGCGCA
. : . : . : . : . : . :
JMSF011D02+ CCTGAGGGATTGCCATGCTGTCGCAG
JMFF018B11+ CCTGAGGGATTGCCATGCTGTCGCAG
JMSF044A07+ GAGCTTCCATAGATCATCATACAGATCATCCTTCCCTGAGGGATTGCCATGCTGTCGCAG
____________________________________________________________
consensus GAGCTTCCATAGATCATCATACAGATCATCCTTCCCTGAGGGATTGCCATGCTGTCGCAG
. : . : . : . : . : . :
JMSF011D02+ AGAAGAGGAAGAGGTTCTATCCACCATCATCATTGAAACAAAAAATGTTTTTATTTGAAA
JMFF018B11+ AGAAGAGGAAGAGGTTCTATCCACCATCATCATTGAAACAAAAAATGTTTTTATTTGAAA
JMSF044A07+ AGAAGAGGAAGAGGTTCTATCCACCATCATCATTGAAACAAAAAATGTTTTTATTTGAAA
____________________________________________________________
consensus AGAAGAGGAAGAGGTTCTATCCACCATCATCATTGAAACAAAAAATGTTTTTATTTGAAA
. : . : . : . : . : . :
JMSF011D02+ ATTCAACAAATACCCAGAAATTCTCAAGCCGAATTCACCGCAGACTTAGCATTTATTCCA
JMFF018B11+ ATTCAACAAATACCCAGAAATTCTCAAGCCGAATTCACCGCAGACTTAGCATTTATTCCA
JMSF044A07+ ATTCAACAAATACCCAGAAATTCTCAAGCCGAATTCACCGCAGACTTAGCATTTATTCCA
____________________________________________________________
consensus ATTCAACAAATACCCAGAAATTCTCAAGCCGAATTCACCGCAGACTTAGCATTTATTCCA
. : . : . : . : . : . :
JMSF011D02+ TTCAATTCAATGGCAACAACCCGACAAATATTAAGAAGAACCCTCTAAACGGAGCAGCGA
JMFF018B11+ TTCAATTCAATGGCAACAACCCGACAAATATTAAGAAGAACCCTCTAAACGGAGCAGCGA
JMSF044A07+ TTCAATTCAATGGCAACAACCCGACAAATATTAAGAAGAACCCTCTAAACGGAGCAGCGA
JMSF014F22+ GGCAACAACCCGACAAATATTAAGAAGAACCCTCTAAACGGAGCAGCGA
____________________________________________________________
consensus TTCAATTCAATGGCAACAACCCGACAAATATTAAGAAGAACCCTCTAAACGGAGCAGCGA
. : . : . : . : . : . :
JMSF011D02+ AAGACGCAAACTTTTCCCTCAAAATTTTGACCCTTTGCTCCCCCTTTACGTTACTACAGG
JMFF018B11+ AAGACGCAAACTTTTCCCTCAAAATTTTGACCCTTTGCTCCCCCTTTACGTTACTACAGG
JMSF044A07+ AAGACGCAAACTTTTCCCTCAAAATTTTGACCCTTTGCTCCCCCTTTACGTTACTACAGG
JMSF014F22+ AAGACGCAAACTTTTCCCTCAAAATTTTGACCCTTTGCTCCCCCTTTACGTTACTACAGG
____________________________________________________________
consensus AAGACGCAAACTTTTCCCTCAAAATTTTGACCCTTTGCTCCCCCTTTACGTTACTACAGG
. : . : . : . : . : . :
JMSF011D02+ CTTTCAGCTC
JMFF018B11+ CTTTCAGCTCAGCAAAGCTTGGCACCAGGCTGCAGCTTATTATAACACTGCCTTCTGTTC
JMSF044A07+ CTTTCAGCTCAGCAAAGCTTGGCACCAGGCTGCAGCTTATTATAACACTGCCTTCTGTTC
JMSF014F22+ CTTTCAGCTCAGCAAAGCTTGGCACCAGGCTGCAGCTTATTATAACACTGCCTTCTGTTC
____________________________________________________________
consensus CTTTCAGCTCAGCAAAGCTTGGCACCAGGCTGCAGCTTATTATAACACTGCCTTCTGTTC
. : . : . : . : . : . :
JMFF018B11+ TGTCTCTCTCTAGAGAATCAAAGGAGGGAGAAGGGCAAAAGAGAGAAAGAAGAAGCCGC
JMSF044A07+ TGTCTCTCTCTAGAGAATCAAAGGAGGGAGAAGGGCAAAAGAGAGAAAGAAGAAGCCGC
JMSF014F22+ TGTCTCTCTCTAGAGAATCAAAGGAGGGAGAAGGGCAAAAGAGAGAAAGAAGAAGCCGCC
____________________________________________________________
consensus TGTCTCTCTCTAGAGAATCAAAGGAGGGAGAAGGGCAAAAGAGAGAAAGAAGAAGCCGCC