Contig 002144:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003E20Sequence417002144 (3)emb|CDP02819.1|2e-05unnamed protein product [Coffea canephora]721004380 (3)emb|CDP02819.1|2e-49unnamed protein product [Coffea canephora]
JMSF012I05Sequence554002144 (3)emb|CDP02819.1|3e-20unnamed protein product [Coffea canephora]710004380 (3)emb|CDP02819.1|3e-47unnamed protein product [Coffea canephora]
JMSF044P03Sequence755002144 (3)emb|CDP02819.1|1e-68unnamed protein product [Coffea canephora]669004380 (3)ref|XP_009621595.1|6e-41PREDICTED: DNA-directed RNA polymerase III subunit RPC5-like isoform X1 [Nicoti

Alignment

This contig is upended


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JMSF044P03+                                  AGCTGCACAACTGCATGAATGGGATTGAGGTGCAACT
                      ____________________________________________________________
consensus                                    AGCTGCACAACTGCATGAATGGGATTGAGGTGCAACT
 
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JMSF044P03+           TATTGCCAACCAGGACCCCAACAGCATATCCAGTTGCGAGAGGAGTTGGTTTCCATTTAG
                      ____________________________________________________________
consensus             TATTGCCAACCAGGACCCCAACAGCATATCCAGTTGCGAGAGGAGTTGGTTTCCATTTAG
 
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JMSF044P03+           TTAAAAGACTCTGCTTTGTCATAGGATGATCAGCATTTCTGTCATAATTCTTGGAATCAA
                      ____________________________________________________________
consensus             TTAAAAGACTCTGCTTTGTCATAGGATGATCAGCATTTCTGTCATAATTCTTGGAATCAA
 
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JMSF044P03+           CATCAATACTCAGGTCAACTTCAACCTCTGAACTTGCAGGCTTCACCCTCACCTCTTCAC
                      ____________________________________________________________
consensus             CATCAATACTCAGGTCAACTTCAACCTCTGAACTTGCAGGCTTCACCCTCACCTCTTCAC
 
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JMSF044P03+           ACCTTTCCTCCATTTCATATGGTCGCCATATTGGTCTTAAAGGATACTGCATTACATATA
JMSF012I05+                                                         CTGCATTACATATA
                      ____________________________________________________________
consensus             ACCTTTCCTCCATTTCATATGGTCGCCATATTGGTCTTAAAGGATACTGCATTACATATA
 
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JMSF044P03+           GCTTGGTGTCTTGATCAATGGAGGGAGTAAGATAAACGTCAATCTCTCGAACAACTTCGT
JMSF012I05+           GCTTGGTGTCTTGATCAATGGAGGGAGTAAGATAAACGTCAATCTCTCGAACAACTTCGT
                      ____________________________________________________________
consensus             GCTTGGTGTCTTGATCAATGGAGGGAGTAAGATAAACGTCAATCTCTCGAACAACTTCGT
 
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JMSF044P03+           CTTCCCCGCCTTCAGTGTCCATTGGCTCGTTATCCAGCACTTCATTGTCTCCGTTTTCAG
JMSF003E20+                                                                   TCAG
JMSF012I05+           CTTCCCCGCCTTCAGTGTCCATTGGCTCGTTATCCAGCACTTCATTGTCTCCGTTTTCAG
                      ____________________________________________________________
consensus             CTTCCCCGCCTTCAGTGTCCATTGGCTCGTTATCCAGCACTTCATTGTCTCCGTTTTCAG
 
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JMSF044P03+           GCTTGGTGTCCACGTCCATCAGTGCGACGTCGTTGGCACTCCGTTCATCTTCTTCTTCAG
JMSF003E20+           GCTTGGTGTCCACGTCCATCAGTGCGACGTCGTTGGCACTCCGTTCATCTTCTTCTTCAG
JMSF012I05+           GCTTGGTGTCCACGTCCATCAGTGCGACGTCGTTGGCACTCCGTTCATCTTCTTCTTCAG
                      ____________________________________________________________
consensus             GCTTGGTGTCCACGTCCATCAGTGCGACGTCGTTGGCACTCCGTTCATCTTCTTCTTCAG
 
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JMSF044P03+           GCTTGGACTCCGGGATGTTATTGATTATCACGGGCTTGGAATCTAATTCTTCCTTTTTAG
JMSF003E20+           GCTTGGACTCCGGGATGTTATTGATTATCACGGGCTTGGAATCTAATTCTTCCTTTTTAG
JMSF012I05+           GCTTGGACTCCGGGATGTTATTGATTATCACGGGCTTGGAATCTAATTCTTCCTTTTTAG
                      ____________________________________________________________
consensus             GCTTGGACTCCGGGATGTTATTGATTATCACGGGCTTGGAATCTAATTCTTCCTTTTTAG
 
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JMSF044P03+           CCACAGGAATGGGATTGGGTTCCGGCAACACAGAATCAGAAGTAGATACCGGTTCCGTCT
JMSF003E20+           CCACAGGAATGGGATTGGGTTCCGGCAACACAGAATCAGAAGTAGATACCGGTTCCGTCT
JMSF012I05+           CCACAGGAATGGGATTGGGTTCCGGCAACACAGAATCAGAAGTAGATACCGGTTCCGTCT
                      ____________________________________________________________
consensus             CCACAGGAATGGGATTGGGTTCCGGCAACACAGAATCAGAAGTAGATACCGGTTCCGTCT
 
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JMSF044P03+           TCAGTTTGGAGGGTTGCGGTTTAGCTCTTGAACCCTTCGGCGCAAACCGCCCTGGTCGAG
JMSF003E20+           TCAGTTTGGAGGGTTGCGGTTTAGCTCTTGAACCCTTCGGCGCAAACCGCCCTGGTCGAG
JMSF012I05+           TCAGTTTGGAGGGTTGCGGTTTAGCTCTTGAACCCTTCGGCGCAAACCGCCCTGGTCGAG
                      ____________________________________________________________
consensus             TCAGTTTGGAGGGTTGCGGTTTAGCTCTTGAACCCTTCGGCGCAAACCGCCCTGGTCGAG
 
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JMSF044P03+           CTTGAGCCTTGGTCGGAACAGCATCAAGGTCCTCTAAATCCAAATCCGCCATCACTCTAG
JMSF003E20+           CTTGAGCCTTGGTCGGAACAGCATCAAGGTCCTCTAAATCCAAATCCGCCATCACTCTAG
JMSF012I05+           CTTGAGCCTTGGTCGGAACAGCATCAAGGTCCTCTAAATCCAAATCCGCCATCACTCTAG
                      ____________________________________________________________
consensus             CTTGAGCCTTGGTCGGAACAGCATCAAGGTCCTCTAAATCCAAATCCGCCATCACTCTAG
 
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JMSF044P03+           TCGAAGAAGATCCCTATCCAGTAGTTTGAAGCTCGGAAGTGAATGAAAATTCGTCTT   
JMSF003E20+           TCGAAGAAGATCCCTATCCAGTAGTTTGAAGCTCGGAAGTGAATGAAAATTCGTCTTGCC
JMSF012I05+           TCGAAGAAGATCCCTATCCAGTAGTTTGAAGCTCGGAAGTGAATGAAAATTCGTCTTGCC
                      ____________________________________________________________
consensus             TCGAAGAAGATCCCTATCCAGTAGTTTGAAGCTCGGAAGTGAATGAAAATTCGTCTTGCC
 
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JMSF003E20+           GTAAAAAAAAACCTCTTCAATCAGGGTTTTAGTTCGCGCTCTGCATCTC           
JMSF012I05+           GTAAAAAAAAACCTCTTCAATCAGGGTTTTAGTTCGCGCTCTGCATCTCCGCAATATATC
                      ____________________________________________________________
consensus             GTAAAAAAAAACCTCTTCAATCAGGGTTTTAGTTCGCGCTCTGCATCTCCGCAATATATC