Contig 002143:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012H15Sequence505002143 (2)ref|XP_009792620.1|5e-18PREDICTED: UPF0481 protein At3g47200-like [Nicotiana sylvestris] ref|XP_00979262723001307 (2)gb|EYU33527.1|2e-59hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]
JMSF031E03Sequence525002143 (2)ref|XP_006360884.1|4e-23PREDICTED: putative UPF0481 protein At3g02645-like [Solanum tuberosum]764001307 (2)gb|EYU33527.1|2e-59hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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JMSF031E03+                       GTAAAGAAATTNTGNTNTAAAACACCCATCAAGCAACAGCATCTTCAC
JMSF012H15+                                              ACCCATCAAGCAACAGCATCTTCAC
                      ____________________________________________________________
consensus                         GTAAAGAAATTNTGNTNTAAAACACCCATCAAGCAACAGCATCTTCAC
 
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JMSF031E03+           GAATTTATCGCCNGCAGAATCGAGGAGGAGTNGTATGTCCTCATCATCACCATAATAGCN
JMSF012H15+           GAATTTATCGCCNGCAGAATCGAGGAGGAGTNGTATGTCCTCATCATCACCATAATAGCN
                      ____________________________________________________________
consensus             GAATTTATCGCCNGCAGAATCGAGGAGGAGTNGTATGTCCTCATCATCACCATAATAGCN
 
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JMSF031E03+           TGCTGCTTTTTCTTTCGAATCCTTTAATTTCTCCCAACACTGCTCCATACTGGGTNGTTT
JMSF012H15+           TGCTGCTTTTTCTTTCGAATCCTTTAATTTCTCCCAACACTGCTCCATACTGGGNTGTTT
                      ____________________________________________________________
consensus             TGCTGCTTTTTCTTTCGAATCCTTTAATTTCTCCCAACACTGCTCCATACTGGGTTGTTT
 
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JMSF031E03+           TTCTCTTTTCAAAAATAAGTCTAAATACATAAGCTTCAAATTTTCCATTTTGCTCAATTT
JMSF012H15+           TTCTCTTTTCAAAAATAAGTCTAAATACATAAGCTTCAAATTTTCCANTTTGCTCAATTT
                      ____________________________________________________________
consensus             TTCTCTTTTCAAAAATAAGTCTAAATACATAAGCTTCAAATTTTCCATTTTGCTCAATTT
 
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JMSF031E03+           GGCATTCCCANGGTGGTAAGGGCCGATGGAGATTAGCAATGGCGTATAAGCATCTGTGTT
JMSF012H15+           GGCANTCCCANGGTGGTAAGGGCCGANGGAGATTAGCAATGGCGTATAAGCATCTGTGTT
                      ____________________________________________________________
consensus             GGCATTCCCANGGTGGTAAGGGCCGATGGAGATTAGCAATGGCGTATAAGCATCTGTGTT
 
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JMSF031E03+           TGTTCTACGTAGCCCNTCATGCACTTTGAATATGCANGCTTCTGAAGATAACTGTTTCAA
JMSF012H15+           TGTTCTACGTAGCCCNTCANGCACTTTGAATATGCANGCTTCTGAAGATAACTGTTTCAA
                      ____________________________________________________________
consensus             TGTTCTACGTAGCCCNTCATGCACTTTGAATATGCANGCTTCTGAAGATAACTGTTTCAA
 
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JMSF031E03+           ATTTTTTATATCCCNTTTTAATGACTCGTAGATTGGTAAATCTTGTTGATCTCCCTCCGT
JMSF012H15+           ATTTTTTATATCCCNTTTTAATGACTCGTAGANTGGTAAATCTTGTTGATCTCCCTCCGT
                      ____________________________________________________________
consensus             ATTTTTTATATCCCNTTTTAATGACTCGTAGATTGGTAAATCTTGTTGATCTCCCTCCGT
 
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JMSF031E03+           GTTTTCTATCATACCNTACTGTCTTTGTAGCTCAGAAATATATATATATATATATATATG
JMSF012H15+           GTTTTCTATCATACCNTACTGTCTTTGTAGCTCAGAAATATATATATATATATATATATG
                      ____________________________________________________________
consensus             GTTTTCTATCATACCNTACTGTCTTTGTAGCTCAGAAATATATATATATATATATATATG
 
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JMSF031E03+           TGTGTGCGCGCGCGCGCAAAAGGATAGAGTACGTAATTTGGCAGTGGGTAGCTCT     
JMSF012H15+           TGTGTGCGCGCGCGCGCAAAAGGATAGAGTACGTAATTTGGCAGTGGGTAGCTCTATACC
                      ____________________________________________________________
consensus             TGTGTGCGCGCGCGCGCAAAAGGATAGAGTACGTAATTTGGCAGTGGGTAGCTCTATACC