| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF025L21 | Sequence | 521 | 002142 (7) | gb|AAV88066.1| | 2e-05 | NBS-LRR protein [Ipomoea batatas] | 765 | 012314 (4) | ref|XP_011075746.1| | 3e-21 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi |
| JMFF026N09 | Sequence | 481 | 002142 (7) | gb|AAV88066.1| | 2e-05 | NBS-LRR protein [Ipomoea batatas] | 756 | 012314 (4) | ref|XP_011075746.1| | 6e-20 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi |
| JMSF008O07 | Sequence | 236 | 002142 (7) | 688 | 012314 (4) | ref|XP_009618655.1| | 4e-13 | PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to | |||
| JMSF009H13 | Sequence | 411 | 002142 (7) | gb|AAV88066.1| | 8e-08 | NBS-LRR protein [Ipomoea batatas] | 803 | 001470 (3) | ref|XP_009764014.1| | 5e-17 | PREDICTED: putative late blight resistance protein homolog R1A-3 isoform X2 [Ni |
| JMSF012G12 | Sequence | 436 | 002142 (7) | gb|AAV88066.1| | 1e-07 | NBS-LRR protein [Ipomoea batatas] | 681 | 001470 (3) | gb|AAF09256.1|AF202179_1 | 2e-11 | disease resistance protein BS2 [Capsicum chacoense] |
| JMSF045G07 | Sequence | 767 | 002142 (7) | gb|AAV88066.1| | 2e-18 | NBS-LRR protein [Ipomoea batatas] | 780 | 001470 (3) | gb|AAF09256.1|AF202179_1 | 4e-18 | disease resistance protein BS2 [Capsicum chacoense] |
| JMSF048B16 | Sequence | 715 | 002142 (7) | gb|AAV88066.1| | 3e-19 | NBS-LRR protein [Ipomoea batatas] | 789 | 012314 (4) | ref|XP_011075746.1| | 6e-22 | PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi |
This contig is upended
. : . : . : . : . : . :
JMSF048B16+ ACGCAACAATCCACGCTCGCACATCAAAGTGGGT
____________________________________________________________
consensus ACGCAACAATCCACGCTCGCACATCAAAGTGGGT
. : . : . : . : . : . :
JMSF048B16+ AGAAATTGGTGAATCTTCATAGACTNGTCTAGCCAAAGTTGTCTTACCGATTCCTCCCAT
JMSF045G07+ AAAGTTGTCTTACCGATTCCTCCCAT
____________________________________________________________
consensus AGAAATTGGTGAATCTTCATAGACTNGTCTAGCCAAAGTTGTCTTACCGATTCCTCCCAT
. : . : . : . : . : . :
JMSF048B16+ ACCTGTAATTGCTATAACCTTTTTTTCCTTAGATCCATGTCCAGTTAGCAGCTTCTTGAT
JMSF045G07+ ACCTATAATTGATACAACTTTTTTTTCCTTAGGTCCAAGTTCAGTTAGCAGCTTCTTGAT
____________________________________________________________
consensus ACCTGTAATTGCTATAACTTTTTTTTCCTTAGGTCCATGTTCAGTTAGCAGCTTCTTGAT
. : . : . : . : . : . :
JMFF025L21+ TTGGAGTGTGAAGCATGCTGGAT
JMSF048B16+ TATCTCAAACTCATCTTTTTTTCCGACCATTTCTTCTTTGGAGTGTGAAGCATGCTGGAT
JMSF045G07+ TATCTCAAACTCGTCTTTTTTCCCGATCATTTGTTCCTTGGAGTGTGAAGCACGCTGGGA
____________________________________________________________
consensus TATCTCAAACTCGTCTTTTTTTCCGATCATTTGTTCTTTGGAGTGTGAAGCATGCTGGAT
. : . : . : . : . : . :
JMFF025L21+ GGAAAGAACTTGAAACCTTTGTAGAACATCATGGGCTGTCTTTCTTCCTTCTGCCTCGTC
JMFF026N09+ CTTTGTAGAACATCATGGGCTGTCTTTCTTCCTTCTGCCTCGTC
JMSF048B16+ GGAAAGAACTTGAAACCTTTGTAGAACATCATGGGCTGTCTTTCTTCCTTCTGCCTCGTC
JMSF045G07+ GGAAAGAAGTTGAGACCTTTGTAGAACATCATGGGCTGTCTTTCTTCCTT---CATCGTC
____________________________________________________________
consensus GGAAAGAACTTGAAACCTTTGTAGAACATCATGGGCTGTCTTTCTTCCTTCTGCCTCGTC
. : . : . : . : . : . :
JMFF025L21+ TATATTCTTGATTTTCACCAACTCTTCCTTGATGGCTTCAATTTCTTCCATTGCACTTTG
JMFF026N09+ TATATTCTTGATTTTCACCAACTCTTCCTTGATGGCTTCAATTTCTTCCATTGCACTTTG
JMSF048B16+ TATATTCTTGATTTTCACCAACTCTTCCTTGATGGCTTCAATTTCTTCCATTGCACTTTG
JMSF045G07+ CATATTCTTGATTTTCACCAACTCTTCCTTGATGGCTTCAATTTCTTCCATTGCACTTTG
____________________________________________________________
consensus TATATTCTTGATTTTCACCAACTCTTCCTTGATGGCTTCAATTTCTTCCATTGCACTTTG
. : . : . : . : . : . :
JMFF025L21+ AAAAACTTGATGAAGTTTCACACAATAAGGCTCAGCCTCGTCCCCTTCTGTGTCCCCCTG
JMFF026N09+ AAAAACTTGATGAAGTTTCACACAATAAGGCTCAGCCTCGTCCCCTTCTGTGTCCCCCTG
JMSF048B16+ AAAAACTTGATGAAGTTTCACACAATAAGGCTCAGCCTCGTCCCCTTCTGTGTCCCTCTG
JMSF045G07+ AAAAATTTGATGAAGTTTCACACAATAAGGCTGAGTCTTCTCCCCTTCTGTGTCCCTCTG
____________________________________________________________
consensus AAAAACTTGATGAAGTTTCACACAATAAGGCTCAGCCTCGTCCCCTTCTGTGTCCCTCTG
. : . : . : . : . : . :
JMFF025L21+ TGGTTTTTCCTTTTTCAAAACGAAATCTGCTAAAT--------CCCTCATCTTCATGATA
JMFF026N09+ TGGTTTTTCCTTTTTCAAAACGAAATCTGCTAAAT--------CCCTCATCTTCATGATA
JMSF048B16+ TGGTTTTTCCTTTTTCAAAACGAAATCTGCTAAAT--------CCCTCATCTTCATGATA
JMSF045G07+ TGGTTTTTCCTCTTTCAAAACGAGATCTGCTATTTTGACTTTATCTTCCTCTTCATCATA
JMSF009H13+ TCTTCATCATA
JMSF012G12+ TCTTCATCATA
____________________________________________________________
consensus TGGTTTTTCCTTTTTCAAAACGAAATCTGCTAAAT--------CCCTCATCTTCATGATA
. : . : . : . : . : . :
JMFF025L21+ AAGGTGTGCTACTAGGATTTCGATTTCATCTTCCACTCTGTAAGCTAAATCCCTGAGCTT
JMFF026N09+ AAGGTGTGCTACTAGGATTTCGATTTCATCTTCCACTCTGTAAGCTAAATCCCTGAGCTT
JMSF008O07+ TTCCACTCTGTAAGCTAAATCGCTGAGCTT
JMSF048B16+ AAGGTGTGCTACTAGGATTTCGATTTCATCTTCCACTCTGTAAGCTAAATCCCTGAGCTT
JMSF045G07+ AAGGTGTGCTACTAGGAATTCGATTTCATCTTCCACTCTGAACGCTAAATCCCTGAGCTT
JMSF009H13+ AAGGTGTGCTACTAGGAATTCGATTTCATCTTCCACTCTGAACGCTAAATCCCTGAGCTT
JMSF012G12+ AAGGTGTGCTACTAGGAATTCGATTTCATCTTCCACTCTGAACGCTAAATCCCTGAGCTT
____________________________________________________________
consensus AAGGTGTGCTACTAGGATTTCGATTTCATCTTCCACTCTGTAAGCTAAATCCCTGAGCTT
. : . : . : . : . : . :
JMFF025L21+ GGTTTCCAAGCGTTTAACTGCTTCAACACCATC------GATTCTTTCCTCATCGTGCTG
JMFF026N09+ GGTTTCCAAGCGTTTAACTGCTTCAACACCATC------GATTCTTTCCTCATCGTGCTG
JMSF008O07+ GGTTTCCAAGCGTTTAACTGCTTCAACACCATC------GATTCTTTCCTCATCGTGCTG
JMSF048B16+ GGTTTCCAAGCGTTTAACTGCTTCAATACCATC------GATTCTTTCCTCATCGTGCTG
JMSF045G07+ CGTTTCCAAGTGTTTAACTGCTTCAACACCATCCATATTGATTCTTTTCTGATCGAATTG
JMSF009H13+ CGTTTCCAAGTGTTTAACTGCTTCAACACCATCCATATTGATTCTTTTCTGATCGAATTG
JMSF012G12+ CGTTTCCAAGTGTTTAACTGCTTCAACACCATCCATATTGATTCTTTTCTGATCGAATTG
____________________________________________________________
consensus GGTTTCCAAGCGTTTAACTGCTTCAACACCATC------GATTCTTTCCTCATCGTGCTG
. : . : . : . : . : . :
JMFF025L21+ ACTTATGAGAAATCCAAGCTTTTGGTGGAAAGATTGGATCAATTCTTTGTTGAAAGGGAT
JMFF026N09+ ACTTATGAGAAATCCAAGCTTTTGGTGGAAAGATTGGATCAATTCTTTGTTGAAAGGGAT
JMSF008O07+ ACTTATGAGAAATCCAAGCTTTTGGTGGAAAGATTGGATCAATTCTTTGTTGAAAGGGAT
JMSF048B16+ ACTTATGAGAAATCCAAGCTTTTGGTGGAAAGATTGGATCAATTCTTTGTTGAAAGGGAT
JMSF045G07+ GGTTATGAGAAATCCAAGGTTTTGGTGGAAAGATTGGATCAAGTCTTTGTTGGGAGAGAT
JMSF009H13+ GGTTATGAGAAATCCAAGGTTTTGGTGGAAAGATTGGATCAAGTCTTTGTTGGGAGAGAT
JMSF012G12+ GGTTATGAGAAATCCAAGGTTTTGGTGGAAAGATTGGATCAAGTCTTTGTTGGGAGAGAT
____________________________________________________________
consensus ACTTATGAGAAATCCAAGCTTTTGGTGGAAAGATTGGATCAATTCTTTGTTGAAAGGGAT
. : . : . : . : . : . :
JMFF025L21+ GAGATGATTGTACTGTACAAGTGGACGAGGGTGATATTGTAAGAACTCAAGCTCTATTGT
JMFF026N09+ GAGATGATTGTACTGTACAAGTGGACGAGGGTGATATTGTAAGAACTCAAGCTCTATTGT
JMSF008O07+ GAGATGATTGTACTGTACAAGTGGACGAGGGTGATATTGTAAGAACTCAAGCTCTATTGT
JMSF048B16+ GAGATGATTGTACTGTACAAGTGGACGAGGGTGATATTGTAAGAACTCAAGCTCTATTGT
JMSF045G07+ GAGATGATAGTGCAGTGCAAGTGGACGAGGCTTATATTGCAAGAATTCAAGCTCTATTGT
JMSF009H13+ GAGATGATAGTGCAGTGCAAGTGGACGAGGCTTATATTGCAAGAATTCAAGCTCTATTGT
JMSF012G12+ GAGATGATAGTGCAGTGCAAGTGGACGAGGCTTATATTGCAAGAATTCAAGCTCTATTGT
____________________________________________________________
consensus GAGATGATTGTACTGTACAAGTGGACGAGGGTGATATTGTAAGAACTCAAGCTCTATTGT
. : . : . : . : . : . :
JMFF025L21+ TCTCAGAAGAGAAGCTACAGCTACACA
JMFF026N09+ TCTCAGAAGAGAAGCTACAGCTACACA
JMSF008O07+ TCTCAGAAGAGAAGCTACAGCTACACAAGCC
JMSF048B16+ TCTCAGAAGAGAAGCTACAGCTACACAAGCCAT
JMSF045G07+ TCTGAGAAGAGAAGCTACAGCTACACAAGCCATTCTTCGATCTCTAGATCTGAAACTGCA
JMSF009H13+ TCTGAGAAGAGAAGCTACAGCTACACAAGCCATTCTTCGATCTCTAGATCTGAAACTGCA
JMSF012G12+ TCTGAGAAGAGAAGCTACAGCTACACAAGCCATTCTTCGATCTCTAGATCTGAAACTGCA
____________________________________________________________
consensus TCTCAGAAGAGAAGCTACAGCTACACAAGCCATTCTTCGATCTCTAGATCTGAAACTGCA
. : . : . : . : . : . :
JMSF045G07+ ACTTTTTTGATTGATTATTGTGGGTAAGGTTTCACAGAAATGAAGATGCAAGTGGAA
JMSF009H13+ ACTTTTTTGATTGATTATTGTGGGTAAGGTTTCACAGAAATGAAGATGCAAGTGGAA
JMSF012G12+ ACTTTTTTGATTGATTATTGTGGGTAAGGTTTCACAGAAATGAAGATGCAAGTGGAATTC
____________________________________________________________
consensus ACTTTTTTGATTGATTATTGTGGGTAAGGTTTCACAGAAATGAAGATGCAAGTGGAATTC