| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS099H04 | Sequence | 597 | 002128 (5) | ref|XP_009771507.1| | 8e-117 | PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris] | |||||
| JMSF002C20 | Sequence | 314 | 002128 (5) | emb|CDP18816.1| | 4e-24 | unnamed protein product [Coffea canephora] | 789 | 011233 (4) | ref|XP_007010830.1| | 7e-36 | Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N |
| JMSF010N19 | Sequence | 320 | 002128 (5) | emb|CDP18816.1| | 3e-23 | unnamed protein product [Coffea canephora] | 720 | 011233 (4) | ref|XP_007010828.1| | 3e-56 | Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea |
| JMSF028G03 | Sequence | 685 | 002128 (5) | ref|XP_009771507.1| | 2e-127 | PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris] | 728 | 011233 (4) | ref|XP_007010830.1| | 3e-44 | Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N |
| JMSF040L08 | Sequence | 682 | 002128 (5) | ref|XP_009771507.1| | 3e-113 | PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris] | 859 | 011233 (4) | ref|XP_007010828.1| | 1e-56 | Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea |
This contig is upended
. : . : . : . : . : . :
JMSF028G03+ TCATACTTTGTCTCATTTGA
____________________________________________________________
consensus TCATACTTTGTCTCATTTGA
. : . : . : . : . : . :
JMFS099H04+ TATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
JMSF028G03+ TGTATTGAATACTCCCTTTATATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
JMSF040L08+ AGCGTTCAGATAGTGGAAAAAAGTGAGC
____________________________________________________________
consensus TGTATTGAATACTCCCTTTATATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
. : . : . : . : . : . :
JMFS099H04+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
JMSF028G03+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
JMSF040L08+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
____________________________________________________________
consensus AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
. : . : . : . : . : . :
JMFS099H04+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
JMSF028G03+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
JMSF040L08+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
____________________________________________________________
consensus AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
. : . : . : . : . : . :
JMFS099H04+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
JMSF028G03+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
JMSF040L08+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
____________________________________________________________
consensus CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
. : . : . : . : . : . :
JMFS099H04+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
JMSF028G03+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
JMSF040L08+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
____________________________________________________________
consensus CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
. : . : . : . : . : . :
JMFS099H04+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
JMSF028G03+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
JMSF040L08+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
____________________________________________________________
consensus ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
. : . : . : . : . : . :
JMFS099H04+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF028G03+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF040L08+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF002C20+ TGAACAGCAGCAGACACCAA
JMSF010N19+ TGAACAGCAGCAGACACCAA
____________________________________________________________
consensus ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
. : . : . : . : . : . :
JMFS099H04+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF028G03+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF040L08+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF002C20+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF010N19+ TTCTNGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
____________________________________________________________
consensus TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
. : . : . : . : . : . :
JMFS099H04+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF028G03+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF040L08+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF002C20+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF010N19+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
____________________________________________________________
consensus GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
. : . : . : . : . : . :
JMFS099H04+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF028G03+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF040L08+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF002C20+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF010N19+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
____________________________________________________________
consensus TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
. : . : . : . : . : . :
JMFS099H04+ GAGCGGAGAACAGAGAC
JMSF028G03+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF040L08+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF002C20+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF010N19+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
____________________________________________________________
consensus GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
. : . : . : . : . : . :
JMSF028G03+ TTA
JMSF040L08+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTC
JMSF002C20+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTC
JMSF010N19+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTCCATTTTTC
____________________________________________________________
consensus TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTCCATTTTTC