Contig 002128:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS099H04Sequence597002128 (5)ref|XP_009771507.1|8e-117PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris]
JMSF002C20Sequence314002128 (5)emb|CDP18816.1|4e-24unnamed protein product [Coffea canephora]789011233 (4)ref|XP_007010830.1|7e-36Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N
JMSF010N19Sequence320002128 (5)emb|CDP18816.1|3e-23unnamed protein product [Coffea canephora]720011233 (4)ref|XP_007010828.1|3e-56Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea
JMSF028G03Sequence685002128 (5)ref|XP_009771507.1|2e-127PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris]728011233 (4)ref|XP_007010830.1|3e-44Nuclear matrix protein-related isoform 3 [Theobroma cacao] ref|XP_007010832.1| N
JMSF040L08Sequence682002128 (5)ref|XP_009771507.1|3e-113PREDICTED: THO complex subunit 1 isoform X1 [Nicotiana sylvestris]859011233 (4)ref|XP_007010828.1|1e-56Nuclear matrix protein-related isoform 1 [Theobroma cacao] gb|EOY19638.1| Nuclea

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF028G03+ TCATACTTTGTCTCATTTGA
                      ____________________________________________________________
consensus TCATACTTTGTCTCATTTGA
 
. : . : . : . : . : . :
JMFS099H04+ TATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
JMSF028G03+ TGTATTGAATACTCCCTTTATATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
JMSF040L08+ AGCGTTCAGATAGTGGAAAAAAGTGAGC
                      ____________________________________________________________
consensus TGTATTGAATACTCCCTTTATATTAACAGCGGAGCGTTCAGATAGTGGAAAAAAGTGAGC
 
. : . : . : . : . : . :
JMFS099H04+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
JMSF028G03+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
JMSF040L08+ AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
                      ____________________________________________________________
consensus AAGAAACATGATGATTCTTCCACAGAACACAACATCATTTGCCTTTGACAGCCGACGAAG
 
. : . : . : . : . : . :
JMFS099H04+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
JMSF028G03+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
JMSF040L08+ AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
                      ____________________________________________________________
consensus AAGTTGATTGCATGTCCTTAACATCACAAGTTTTCCTCGTGCAAATAGTTCTGCCTTCCC
 
. : . : . : . : . : . :
JMFS099H04+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
JMSF028G03+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
JMSF040L08+ CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
                      ____________________________________________________________
consensus CAATATATCTTGTTTACTTTCAATGTACCCAAATATATCTTCACAATTTTTCATGGTGGA
 
. : . : . : . : . : . :
JMFS099H04+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
JMSF028G03+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
JMSF040L08+ CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
                      ____________________________________________________________
consensus CATTTCTGTCAAATCTTCTAAAAGCTGAAATATCATGCCACCTTCAATATGTTCTTTCTC
 
. : . : . : . : . : . :
JMFS099H04+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
JMSF028G03+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
JMSF040L08+ ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
                      ____________________________________________________________
consensus ACAAAGATATAGTACAATGTCAAGAAGTCGTGGAATTTGACCCTGACTGCTTTCACCATC
 
. : . : . : . : . : . :
JMFS099H04+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF028G03+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF040L08+ ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
JMSF002C20+ TGAACAGCAGCAGACACCAA
JMSF010N19+ TGAACAGCAGCAGACACCAA
                      ____________________________________________________________
consensus ATCAATTGACTGCCCATACTGCATGATTTTCTGCCCTGCCTGAACAGCAGCAGACACCAA
 
. : . : . : . : . : . :
JMFS099H04+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF028G03+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF040L08+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF002C20+ TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
JMSF010N19+ TTCTNGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
                      ____________________________________________________________
consensus TTCTTGGAGTAGAGATCTCAAAATATTCTCCAGTAGCTGATTCTCATCCTGGACTAATTT
 
. : . : . : . : . : . :
JMFS099H04+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF028G03+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF040L08+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF002C20+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
JMSF010N19+ GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
                      ____________________________________________________________
consensus GGTTTGCCTCTGAGGTTTGATAGCTTCTTGCACAGTCTGGAGAGCGAATTCTTCGGGGAG
 
. : . : . : . : . : . :
JMFS099H04+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF028G03+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF040L08+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF002C20+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
JMSF010N19+ TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
                      ____________________________________________________________
consensus TCCCGGGTGAAGAATAGCCTTCCTAAATAAATCCATGCTTGAGAAGAGCTTCTGATTTGA
 
. : . : . : . : . : . :
JMFS099H04+ GAGCGGAGAACAGAGAC
JMSF028G03+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF040L08+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF002C20+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
JMSF010N19+ GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
                      ____________________________________________________________
consensus GAGCGGAGAACAGAGACGAGAGCTCGCCGACAGGCCTCTGCTGAATTCGCCCTTCTTTCG
 
. : . : . : . : . : . :
JMSF028G03+ TTA
JMSF040L08+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTC
JMSF002C20+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTC
JMSF010N19+ TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTCCATTTTTC
                      ____________________________________________________________
consensus TTATAGGCCAGCACTCAGTATTCTACGGCAGTACGGCGCGCTTAGCAGTTTCCATTTTTC