Contig 002127:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-                                         CACAAATTTCAGGAAATGTGTGCAAGGAA
                      ____________________________________________________________
consensus                                            CACAAATTTCAGGAAATGTGTGCAAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          CAGAAAGTTTGTGCTTGAACCAATGGCAAGTAACGTTATGTTTCTTCTAAGAGTCCTACT
                      ____________________________________________________________
consensus             CAGAAAGTTTGTGCTTGAACCAATGGCAAGTAACGTTATGTTTCTTCTAAGAGTCCTACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          GACGTAAAGAACAAAGAAGTGAAGAACCAATGGCTCTGACAACTGACAAGACCAAAATGG
                      ____________________________________________________________
consensus             GACGTAAAGAACAAAGAAGTGAAGAACCAATGGCTCTGACAACTGACAAGACCAAAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          TATGCTCTTAAAGCGATCATGGTTCTCCGGCATGTTTGCTAATCAGAATTCAAGGATGGA
                      ____________________________________________________________
consensus             TATGCTCTTAAAGCGATCATGGTTCTCCGGCATGTTTGCTAATCAGAATTCAAGGATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          AGATGAGTATTACTTTTCAGTCTCGAAATCTTGATACATCATCCAAGGCCTCTCACATAC
JMFN033F15+                                  CGAAATCTGNATACATCATCCAAGGCCTCTCACATAC
                      ____________________________________________________________
consensus             AGATGAGTATTACTTTTCAGTCTCGAAATCTTGATACATCATCCAAGGCCTCTCACATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          TGATCAAGTGTACTGTTAAATAGTTCAGATTTAATAGGAGTTCCAGGAGAATATAGCGGA
JMFN033F15+           TGATCAAGTGTACTGTTAAATAGTTCAGATTTAATAGGAGTTCCAGGAGAATATAGCGGA
                      ____________________________________________________________
consensus             TGATCAAGTGTACTGTTAAATAGTTCAGATTTAATAGGAGTTCCAGGAGAATATAGCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          TTCTTGACAACATATTCAACATACAAGTTGTAAATGTACTTCAAGGAGTCCCTTAGATCA
JMFN033F15+           TTCTTGACAACATATTCAACATACAAGTTGTAAATGTACTTCAAGGAGTCCCTTAGATCA
                      ____________________________________________________________
consensus             TTCTTGACAACATATTCAACATACAAGTTGTAAATGTACTTCAAGGAGTCCCTTAGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          CCAGTCCTTGGATGAGTAACTAGGATGATCTTTATCCCAGATGGGCTTTCCATGAAACTT
JMFN033F15+           CCAGTCCTTGGATGAGTAACTAGGATGATCTTTATCCCAGATGGGCTTTCCATGAAACTT
JMSF010I10+                                            ATCCCAGATGGGCTTTCCATGAAACTT
                      ____________________________________________________________
consensus             CCAGTCCTTGGATGAGTAACTAGGATGATCTTTATCCCAGATGGGCTTTCCATGAAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          AATTTGTATGTATTTGTACGAAAACTATGAAATGAACAACCTTGCCCAGGTAACTGAGGC
JMFN033F15+           AATTTGTATGTATTTGTACGAAAACTATGAAATGAACAACCTTGCCCAGGTAACTGAGGC
JMSF010I10+           AATTNGTATGTATTTGTACGAAAACTATGAAATGAACAACCTTGCCCAGGTAACTGAGGC
                      ____________________________________________________________
consensus             AATTTGTATGTATTTGTACGAAAACTATGAAATGAACAACCTTGCCCAGGTAACTGAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          ACTCCAAGATTTCCTTTCTCAATGCTTGTAGGATCCATCTTAGCTGTTAAGGATTTGAGA
JMFN033F15+           ACTCCAAGATTTCCTTTCTCAATGCTTGTAGGATCCATCTTAGCTGTTAAGGATTTGAGA
JMSF010I10+           ACTCCAAGATTTCCTTTCTCAATGCTTGTAGGATCCATCTTAGCTGTTAAGGATTTGAGA
                      ____________________________________________________________
consensus             ACTCCAAGATTTCCTTTCTCAATGCTTGTAGGATCCATCTTAGCTGTTAAGGATTTGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          GAGAAGAGGAGACCAAACATGAGCTTATGATCCTGCTGAGCATTGAGAGTCTTAAGGGGG
JMFN033F15+           GAGAAGAGGAGACCAAACATGAGCTTATGATCCTGCTGAGCATTGAGAGTCTTAAGGGGG
JMSF010I10+           GAGAAGAGGAGACCAAACATGAGCTTATGATCCTGCTGAGCATTGAGAGTCTTAAGGGGG
                      ____________________________________________________________
consensus             GAGAAGAGGAGACCAAACATGAGCTTATGATCCTGCTGAGCATTGAGAGTCTTAAGGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          CGATTCCATTCCCTGTAAAGTAGGCACACTCCATTTCTATTGAACACATACAACATGTGG
JMFN033F15+           CGATTCCATTCCCTGTAAAGTAGGCACACTCCATTTCTATTGAACACATACAACATGTGG
JMSF010I10+           CGATTCCATTCCCTGTAAAGTAGGCACACTCCATTTCTATTGAACACATACAACATGTGG
                      ____________________________________________________________
consensus             CGATTCCATTCCCTGTAAAGTAGGCACACTCCATTTCTATTGAACACATACAACATGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          GCATTGTTTCCCGACGCTGTAGGGGGAGGCGGCGACGGGCTGATCTCTGATCCTCCGAAG
JMFN033F15+           GCATTGTTTCCCGACGCTGTAGGGGGAGGCGGCGACGGGCTGATCTCTGATCCTCCGAAG
JMSF010I10+           GCATTGTTTCCCGACGCTGTAGGGGGAGGCGGCGACGGGCTGATCTCTGATCCTCCGAAG
                      ____________________________________________________________
consensus             GCATTGTTTCCCGACGCTGTAGGGGGAGGCGGCGACGGGCTGATCTCTGATCCTCCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF010I10-          AACTGCATCCTTCACTGAA                                         
JMFN033F15+           AACTGCATCCTTCACTGAAACCTTCAAGGATTTACAAAATTGGTTGCAGTTTATATAGCT
JMSF010I10+           AACTGCATCCTTCACTGAAACCTTCAAGGATTTACAAAATTGGTTGCAGTTTATATAGCT
                      ____________________________________________________________
consensus             AACTGCATCCTTCACTGAAACCTTCAAGGATTTACAAAATTGGTTGCAGTTTATATAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN033F15+           GCAGAGCTCAAATGACTCTGAAGACAAGA                               
JMSF010I10+           GCAGAGCTCAAATGACTCTGAAGACAAGAGCTTGAGCAATTCAGCAATATCGTAGACGGC
                      ____________________________________________________________
consensus             GCAGAGCTCAAATGACTCTGAAGACAAGAGCTTGAGCAATTCAGCAATATCGTAGACGGC