Contig 002120:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009N05Sequence382002120 (8)ref|XP_009767239.1|1e-16PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nico494002120 (8)gb|KDO52758.1|7e-38hypothetical protein CISIN_1g0363872mg, partial [Citrus sinensis]
JMSF011F13Sequence420002120 (8)ref|XP_009767239.1|1e-24PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nico176019247
JMSF024K19Sequence669002120 (8)ref|XP_009767239.1|1e-96PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nico173002120 (8)gb|EYU35585.1|2e-08hypothetical protein MIMGU_mgv1a0077291mg, partial [Erythranthe guttata]
JMSF027A12Sequence659002120 (8)ref|XP_009767239.1|7e-83PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nico175018232
JMSF052L21Sequence634002120 (8)ref|XP_009767239.1|4e-88PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Nico914002120 (8)ref|XP_011075300.1|8e-144PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic isofo

Alignment

This contig is upended


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rJMSF052L21-                                                   ATATTATAAAGGATGATTG
                      ____________________________________________________________
consensus                                                      ATATTATAAAGGATGATTG
 
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rJMSF009N05-                                GTTGATAGTTGTTCANCTATTTGCGTTCCAAAGTCGAT
rJMSF052L21-          ATTGTACAAAAGCAACTGCCATGTTGATAGTTGTTCAACTATTTGC-TTCCAAAGTCGAT
                      ____________________________________________________________
consensus             ATTGTACAAAAGCAACTGCCATGTTGATAGTTGTTCAACTATTTGCGTTCCAAAGTCGAT
 
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rJMSF009N05-          ATTATGTACTCTCCATTCACGACTACTGTTCAACGTCAAANAAAATTGCTCATCCNAAAC
rJMSF052L21-          ATTATGTACTCTCCATTCACAACTACTGTTCAACGTCAAAAAAAATTGCTCATCCAAAAC
                      ____________________________________________________________
consensus             ATTATGTACTCTCCATTCACGACTACTGTTCAACGTCAAAAAAAATTGCTCATCCAAAAC
 
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rJMSF009N05-          GTGCNATGANCCATGTGGAATCAGTCATCTATCCGAGATACTTTAATAAGACGCCGNCAT
rJMSF024K19-                                                                    AT
rJMSF052L21-          CTGCAATGACCCATGTGGAATCAGTCATCTATCCGAGATACTTTAATAAGACGCCGTCAT
                      ____________________________________________________________
consensus             GTGCAATGACCCATGTGGAATCAGTCATCTATCCGAGATACTTTAATAAGACGCCGTCAT
 
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rJMSF009N05-          TACCCAGTACANAACCTTGTTTGTCATTGATAAACTTGACGGAATAAAGATTAGCTGCAA
rJMSF024K19-          TACCCAGTACAAAACCTTGTNTGTNATTGANAAACTTGANGGANTAAAGATTAGCTGCGA
rJMSF052L21-          TACCCAGTACAAAACCTTGTTTGTCATTGATAAACTTGACGGAATAAAGATTAGCTGCAA
                      ____________________________________________________________
consensus             TACCCAGTACAAAACCTTGTTTGTCATTGATAAACTTGACGGAATAAAGATTAGCTGCAA
 
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rJMSF009N05-          TACTATCAGCTGCTTTGTCACGAATCCNTGTCTNGCCACNGTTTGTGGTTTTCAACAAAA
rJMSF024K19-          TACTATCAGCTGCNTTGTCACGAATCCNTGTNTTGCNACTGTNTGTGGNTTTCAACAAAA
rJMSF052L21-          TACTATCAGCTGCTTTGTCACGAATCCATGTCTTGCCACTGTTTGTGGTTTTCAACAAAA
                      ____________________________________________________________
consensus             TACTATCAGCTGCTTTGTCACGAATCCATGTCTTGCCACTGTTTGTGGTTTTCAACAAAA
 
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rJMSF009N05-          CCCCACTCCCNCCAGCTGCCCAAGCCTCATCCTGTGAGCGATAACCAACATNAAGAATGC
rJMSF024K19-          CCCCACTCCCACCAGCTGNNCAAGCCTCNTCCTGTGAGCGATAACCAACAT         
rJMSF052L21-          CCCCACTCCCACCAGCTGCCCAAGCCTCATCCTGTGAGCGATAACCAACATCAAGAATGC
                      ____________________________________________________________
consensus             CCCCACTCCCACCAGCTGCCCAAGCCTCATCCTGTGAGCGATAACCAACATCAAGAATGC
 
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rJMSF009N05-          CNAAACCACGACTCTGCACAGGAATTTCTTCANAATCCTCCGTNATCCCTGNTCCTTTGC
rJMSF052L21-          CAAAACCACGACTCTGCACAGGAATTTCTTCAAAATCCTCCGTTATCCCTGTTCCTTTGC
                      ____________________________________________________________
consensus             CAAAACCACGACTCTGCACAGGAATTTCTTCAAAATCCTCCGTTATCCCTGTTCCTTTGC
 
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rJMSF009N05-          TAAGATATAATCCTCCACCACGGACTANNAGCCAAAGGCCACCATCAGNTCTCCNGCCCA
rJMSF052L21-          TAAGATATAATCCTCCACCACGGACTAGTAGCCAAAGGCCACCATCAGTTCTCCAGCCCA
                      ____________________________________________________________
consensus             TAAGATATAATCCTCCACCACGGACTAGTAGCCAAAGGCCACCATCAGTTCTCCAGCCCA
 
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rJMSF009N05-          TGTTTTGGATTCTTCTAGCCNCAGCCCTATTATGTG                        
rJMSF052L21-          TGTTTTGGATTCTTCTAGCCACAGCCCTATTATGTGGCTGCCAGAATGGCTGCCCTGGCT
                      ____________________________________________________________
consensus             TGTTTTGGATTCTTCTAGCCACAGCCCTATTATGTGGCTGCCAGAATGGCTGCCCTGGCT
 
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rJMSF052L21-          CCCAGGTCAAATAGAAGTTACCACGGCTTGACACAGCAACATAACGTCCATCAGGGGAAC
                      ____________________________________________________________
consensus             CCCAGGTCAAATAGAAGTTACCACGGCTTGACACAGCAACATAACGTCCATCAGGGGAAC
 
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rJMSF052L21-          GGTTTACAGTACTAAATGTTCCTGTATAGTAGCTAGCTCCACTAATACCACTAGAAACTG
                      ____________________________________________________________
consensus             GGTTTACAGTACTAAATGTTCCTGTATAGTAGCTAGCTCCACTAATACCACTAGAAACTG
 
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rJMSF052L21-          TTCTATTCAGTGTAGCAGAAACAGTTTCTTGCACAGCAGCCCTCCAGTTGTATCCCTTAT
                      ____________________________________________________________
consensus             TTCTATTCAGTGTAGCAGAAACAGTTTCTTGCACAGCAGCCCTCCAGTTGTATCCCTTAT
 
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rJMSF052L21-          TTGATGTAAGATATATAGCACCTTCATCAGTTACCATTTCTGCACTGTTTTCACCTGTAG
JMSF052L21+                                                TTCTGCACTGTTTTCACCTGTAG
JMSF024K19+            TGATGTAAGATATATAGCACCTTCATCAGTTACCATTTCTGCACTGTTTTCACCTGTAG
                      ____________________________________________________________
consensus             TTGATGTAAGATATATAGCACCTTCATCAGTTACCATTTCTGCACTGTTTTCACCTGTAG
 
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rJMSF052L21-          CTTGTATATATACCATATCACCAGGTAGCTGAGAACTTAATGGTATTCGCTGCCAGGTTT
JMSF052L21+           CTTGTATATATACCATATCACCAGGTAGCTGAGAACTTAATGGTATTCGCTGCCAGGTTT
JMSF024K19+           CTTGTATATATACCATATCACCAGGTAGCTGAGAACTTAATGGTATTCGCTGCCAGGTTT
JMSF027A12+            TTGTATATATACCATATCACCAGGTAGCTGAGAACTTAATGGTATTCGCTGCCAGGTTT
                      ____________________________________________________________
consensus             CTTGTATATATACCATATCACCAGGTAGCTGAGAACTTAATGGTATTCGCTGCCAGGTTT
 
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rJMSF052L21-          CCCCAGCATCAGAAGTGTGCAA                                      
JMSF052L21+           CCCCAGCATCAGAAGTGTGCAACAAGATGGCTGGTTTTCCAACAATCCACCCCTCCTTCC
JMSF024K19+           CCCCAGCATCAGAAGTGTGCAACAAGATGGCTGGTTTTCCAACAATCCACCCCTCCTTCC
JMSF027A12+           CCCCAGCATCAGAAGTGTGCAACAAGATGGCTGGTTTTCCAACAATCCACCCCTCCTTCC
                      ____________________________________________________________
consensus             CCCCAGCATCAGAAGTGTGCAACAAGATGGCTGGTTTTCCAACAATCCACCCCTCCTTCC
 
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JMSF052L21+           CTTTGAAGCTTATTGCATTAAACCGATAATTGAAATCTTCCTCCTCAGCTGAGGAAATAG
JMSF024K19+           CTTTGAAGCTTATTGCATTAAACCGATAATTGAAATCTTCCTCCTCAGCTGAGGAAATAG
JMSF027A12+           CTTTGAAGCTTATTGCATTAAACCGATAATTGAAATCTTCCTCCTCAGCTGAGGAAATAG
                      ____________________________________________________________
consensus             CTTTGAAGCTTATTGCATTAAACCGATAATTGAAATCTTCCTCCTCAGCTGAGGAAATAG
 
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JMSF052L21+           ATCGTGAAACCCAAGTGTTTCCTCCATCTTTAGTTTCCAAAATTGTTTGTCTAGTCCCCA
JMSF024K19+           ATCGTGAAACCCAAGTGTTTCCTCCATCTTTAGTTTCCAAAATTGTTTGTCTAGTCCCCA
JMSF027A12+           ATCGTGAAACCCAAGTGTTTCCTCCATCTTTAGTTTCCAAAATTGTTTGTCTAGTCCCCA
                      ____________________________________________________________
consensus             ATCGTGAAACCCAAGTGTTTCCTCCATCTTTAGTTTCCAAAATTGTTTGTCTAGTCCCCA
 
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JMSF052L21+           ATAGAAAGCCGTGATTGGGGTCGTCCGGTACGAAAGCGATGTCGAGAAGCACGACGCCGG
JMSF024K19+           ATAGAAAGCCGTGATTGGGGTCGTCCGGTACGAAAGCGATGTCGAGAAGCACGACGCCGG
JMSF027A12+           ATAGAAAGCCGTGATTGGGGTCGTCCGGTACGAAAGCGATGTCGAGAAGCACGACGCCGG
JMSF011F13+           ATAGAAAGCCGTGATTGGGGTCGTCCGGTACGAAAGCGATGTCGAGAAGCACGACGCCGG
JMSF009N05+                                                 ATGTCGAGAAGCACGACGCCGG
                      ____________________________________________________________
consensus             ATAGAAAGCCGTGATTGGGGTCGTCCGGTACGAAAGCGATGTCGAGAAGCACGACGCCGG
 
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JMSF052L21+           GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
JMSF024K19+           GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
JMSF027A12+           GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
JMSF011F13+           GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
JMSF009N05+           GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
                      ____________________________________________________________
consensus             GGTCGATAGGCAAGTAAACCCTCTCCCACTCCGACAGCGGCTCGTCGGCAGCTCTAGCCG
 
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JMSF052L21+           GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
JMSF024K19+           GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
JMSF027A12+           GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
JMSF011F13+           GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
JMSF009N05+           GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
                      ____________________________________________________________
consensus             GGCAGAGGCCAACCAAAGGCGAGAGAGAAACTGCAGCAGCAGACTCGGCAATCAAACGCC
 
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JMSF052L21+           GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
JMSF024K19+           GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
JMSF027A12+           GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
JMSF011F13+           GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
JMSF009N05+           GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
                      ____________________________________________________________
consensus             GGCGACTGAGAGACGCTGCGACAACCAGACGCTGGGAAAGGCGGCGGCTGGTGGCAGGGG
 
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JMSF052L21+           TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
JMSF024K19+           TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
JMSF027A12+           TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
JMSF011F13+           TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
JMSF009N05+           TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
                      ____________________________________________________________
consensus             TGGAAGCTCGGAAATGTCGGCGTAAAATGGCGGAGCCGTGGCTGTGTAGAGAGGGCTCGA
 
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JMSF052L21+           GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
JMSF024K19+           GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
JMSF027A12+           GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
JMSF011F13+           GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
JMSF009N05+           GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
                      ____________________________________________________________
consensus             GAGGAGCGCGGAAGGGGTTGGAGCAGTCGGTGAGCACTCGAGGAGACGCCATTGGTAGAC
 
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JMSF052L21+           AGACCCTT                                                    
JMSF024K19+           AGACCCTTT                                                   
JMSF027A12+           AGACCCTTTAGCTTGTTTCTGCTATGCTAGTCTGTGTTTGTGCGTGTCTTATCCGAAACC
JMSF011F13+           AGACCCTTTAGCTTGTTTCTGCTATGCTAGTCTGTGTTTGTGCGTGTCTTATCCGAAACC
JMSF009N05+           AGACCCTTTAGCTTGTTTCTGCTATGCTAGTCTGTGTTTGTGCGTGTCTTATCCGAAACC
                      ____________________________________________________________
consensus             AGACCCTTTAGCTTGTTTCTGCTATGCTAGTCTGTGTTTGTGCGTGTCTTATCCGAAACC