Contig 002117:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009K19Sequence288002117 (2)ref|XP_009766329.1|103PREDICTED: uncharacterized protein LOC104217722 [Nicotiana sylvestris]741009944 (2)ref|XP_009622453.1|324PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]
JMSF017N14Sequence216002117 (2)ref|XP_009622453.1|59.3PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]711009944 (2)ref|XP_009622453.1|227PREDICTED: uncharacterized protein LOC104113849 [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF009K19+                       CAAGCATGGTGAGCTGCTGCTGACTGAAACCCAGAACTGATTTCAGAG
                      ____________________________________________________________
consensus                         CAAGCATGGTGAGCTGCTGCTGACTGAAACCCAGAACTGATTTCAGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017N14+                                 GTAAGCATTTCCTGCTGCTATTTGCATCCAAACTGAGG
JMSF009K19+           TGTGGGAATAGAGTGGGAAATTGTAAGCATTTCCTGCTGCTATTTGCATCCAAACTGAGG
                      ____________________________________________________________
consensus             TGTGGGAATAGAGTGGGAAATTGTAAGCATTTCCTGCTGCTATTTGCATCCAAACTGAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017N14+           CCCCAAGACCCACCCATGGTGGCCTTGTCCCTCCCTTCAAGTTCACCATTCTTGAGACCC
JMSF009K19+           CCCCAAGACCCACCCATGGTGGCCTTGTCCCTCCCTTCAAGTTCACCATTCTTGAGACCC
                      ____________________________________________________________
consensus             CCCCAAGACCCACCCATGGTGGCCTTGTCCCTCCCTTCAAGTTCACCATTCTTGAGACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017N14+           TTTGTTTAGCTCTCAAGAATCAGGGGATAGCAGAGGAAAGAGTGGGTTTTGATCT-ATTT
JMSF009K19+           TTTGTTTAGCTCTCAAGAATCAGGGGATAGCAGAGGAAAGAGTGGGTTTTGATCTGATTT
                      ____________________________________________________________
consensus             TTTGTTTAGCTCTCAAGAATCAGGGGATAGCAGAGGAAAGAGTGGGTTTTGATCTGATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF017N14+           GGTTTTGCAGGGAGGGGGGAAGAATTGAGGAAAGGAGTGTGAAAGTGAGAGATTGTGTC 
JMSF009K19+           GGTTTTGCAGGGAGGGGGGAAGAATTGAGGAAAGGAGTGTGAAAGTGAGAGATTGTGTCC
                      ____________________________________________________________
consensus             GGTTTTGCAGGGAGGGGGGAAGAATTGAGGAAAGGAGTGTGAAAGTGAGAGATTGTGTCC