| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003G01 | Sequence | 562 | 002105 (6) | gb|ABB72818.1| | 4e-81 | glutamate--tRNA ligase-like protein [Solanum tuberosum] | 787 | 008448 (6) | ref|XP_009796335.1| | 2e-88 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve |
| JMFF015N05 | Sequence | 551 | 002105 (6) | gb|ABB72818.1| | 6e-79 | glutamate--tRNA ligase-like protein [Solanum tuberosum] | 731 | 008448 (6) | ref|XP_009368383.1| | 1e-78 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 |
| JMFF016B03 | Sequence | 616 | 002105 (6) | gb|ABB72818.1| | 9e-96 | glutamate--tRNA ligase-like protein [Solanum tuberosum] | 618 | 008448 (6) | ref|XP_007043106.1| | 1e-58 | Glutamate tRNA synthetase [Theobroma cacao] gb|EOX98937.1| Glutamate tRNA synthe |
| JMFF041L13 | Sequence | 652 | 002105 (6) | gb|ABB72818.1| | 8e-102 | glutamate--tRNA ligase-like protein [Solanum tuberosum] | 637 | 008448 (6) | ref|XP_009796335.1| | 7e-56 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Nicotiana sylve |
| JMFF050P03 | Sequence | 619 | 002105 (6) | gb|ABB72818.1| | 9e-96 | glutamate--tRNA ligase-like protein [Solanum tuberosum] | 583 | 008448 (6) | ref|XP_009368383.1| | 8e-48 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 |
| JMSF008G20 | Sequence | 359 | 002105 (6) | ref|XP_004231106.1| | 2e-25 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial [Solanum lycoper | 693 | 008448 (6) | ref|XP_009368383.1| | 2e-59 | PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 |
This contig is upended
. : . : . : . : . : . :
JMFF041L13+ TTTCCAACTCTTCTGGCACT
____________________________________________________________
consensus TTTCCAACTCTTCTGGCACT
. : . : . : . : . : . :
JMFF041L13+ TCCTCTTCAGTGGCACTGGCCCATTTTCCTGTGTATACTGGAGGCAACTGCTTCAATTTT
JMFF016B03+ TGGCCCATTTTCCTGTGTATACTGGAGGCAACTGCTTCAATTTT
JMFF050P03+ TGGCCCATTTTCCTGTGTATACTGGAGGCAACTGCTTCAATTTT
____________________________________________________________
consensus TCCTCTTCAGTGGCACTGGCCCATTTTCCTGTGTATACTGGAGGCAACTGCTTCAATTTT
. : . : . : . : . : . :
JMFF041L13+ GCTATCTCTTTCATTTTCTCTAGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
JMFF003G01+ TCATTTTCTCTAGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
JMFF016B03+ GCTATCTCTTTCATTTTCTCTAGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
JMFF015N05+ AGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
JMFF050P03+ GCTATCTCTTTCATTTTCTCTAGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
____________________________________________________________
consensus GCTATCTCTTTCATTTTCTCTAGTTCCTCATTAGAGCAGAAACAGCGGTAAACATGACCA
. : . : . : . : . : . :
JMFF041L13+ GATTGTAAAAGTTTTTCTGCATATTCCTTGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
JMFF003G01+ GATTGTAAAAGTTTTTCTGCATATTCCTNGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
JMFF016B03+ GATTGTAAAAGTTTTTCTGCATATTCCTTGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
JMFF015N05+ GATTGTAAAAGTTTTTCTGCATATTCCTTGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
JMFF050P03+ GATTGTAAAAGTTTTTCTGCATATTCCTTGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
____________________________________________________________
consensus GATTGTAAAAGTTTTTCTGCATATTCCTTGTAAAGTGAATTCCTCTCGGACTGCCTGTAA
. : . : . : . : . : . :
JMFF041L13+ GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
JMFF003G01+ GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
JMFF016B03+ GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
JMFF015N05+ GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
JMFF050P03+ GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
____________________________________________________________
consensus GGACCATAGTTTCCACCAATGCCAGGACCTTCATCCCAATTGAGACCAAGCCAAGAAAGA
. : . : . : . : . : . :
JMFF041L13+ TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
JMFF003G01+ TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
JMFF016B03+ TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
JMFF015N05+ TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
JMFF050P03+ TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
____________________________________________________________
consensus TCAGAAAGCACGGCTTCCTCCGACTCCCTTGTTGATCTTTCCAAGTCGGTGTCTTCAATT
. : . : . : . : . : . :
JMFF041L13+ CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
JMFF003G01+ CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
JMFF016B03+ CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
JMFF015N05+ CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
JMFF050P03+ CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
JMSF008G20+ GGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
____________________________________________________________
consensus CGGAGAATAAACTTCCCACCCTTGGACCGGGCAAATAGGTAATTGAAAAGAGCAGTTCTG
. : . : . : . : . : . :
JMFF041L13+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
JMFF003G01+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
JMFF016B03+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
JMFF015N05+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
JMFF050P03+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
JMSF008G20+ GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
____________________________________________________________
consensus GCACCTCCGACGTGGAGATTTCCGGTAGGCGATGGAGCAAAACGAACCCGAACTTCCTCT
. : . : . : . : . : . :
JMFF041L13+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
JMFF003G01+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
JMFF016B03+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
JMFF015N05+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
JMFF050P03+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
JMSF008G20+ CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
____________________________________________________________
consensus CCTTTTGCTCCTCTATTCAGAGGAGAGTAGGTTTCTGTAGATGAAGCAGAAACTGAGAAC
. : . : . : . : . : . :
JMFF041L13+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
JMFF003G01+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
JMFF016B03+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
JMFF015N05+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
JMFF050P03+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
JMSF008G20+ GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
____________________________________________________________
consensus GCTCTCTTCGGGAAGCAGTGATAGTAGACACTCTGGCTGTTCTTTGCACTGCCATTGCGA
. : . : . : . : . : . :
JMFF041L13+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
JMFF003G01+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
JMFF016B03+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
JMFF015N05+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
JMFF050P03+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
JMSF008G20+ CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
____________________________________________________________
consensus CAGTAAAGCGATGATTGGCGGAAAATTGGCGGCGCCACCTCCTTAGGTATCAGACTGATT
. : . : . : . : . : . :
JMFF041L13+ CTTATCCATGGCACTCCCACCACCAGCATCCA
JMFF003G01+ CTTATCCATGGCACTCCCACCACCAGCATCCA
JMFF016B03+ CTTATCCATGGCACTCCCACCACCAGCATCCA
JMFF015N05+ CTTATCCATGGCACTCCCACCACCAGAATCCA
JMFF050P03+ CTTATCCATGGCACTCCCACCACCAGAATCCA
JMSF008G20+ CTTATCCATGGCACTCCCACCACCAGCATCGCCGCCATTAGACCTCTTCTTCTTCTTCTC
____________________________________________________________
consensus CTTATCCATGGCACTCCCACCACCAGCATCCACGCCATTAGACCTCTTCTTCTTCTTCTC