| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003G11 | Sequence | 544 | 002104 (5) | ref|XP_006344418.1| | 132 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 513 | 003936 (4) | gb|AFK47156.1| | 5e-24 | unknown [Medicago truncatula] |
| JMSF005E17 | Sequence | 427 | 002104 (5) | ref|XP_006344418.1| | 132 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 152 | 006007 (14) | |||
| JMSF008E07 | Sequence | 321 | 002104 (5) | ref|XP_006344418.1| | 102 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 506 | 003936 (4) | ref|XP_006344418.1| | 95.5 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
| JMSF011G23 | Sequence | 268 | 002104 (5) | ref|XP_006344418.1| | 83.2 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 561 | 003936 (4) | ref|XP_006344418.1| | 189 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
| JMSF013J11 | Sequence | 513 | 002104 (5) | ref|XP_006344418.1| | 125 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] | 655 | 003936 (4) | ref|XP_006344418.1| | 288 | PREDICTED: uncharacterized protein LOC102593974 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF003G11+ AGGTG
____________________________________________________________
consensus AGGTG
. : . : . : . : . : . :
JMFF003G11+ AGTTGGGATCGGAAATTGGAAGAAGGGGCGGCGGCGATGTGGGTTTTCAAGGTTTCGGAG
JMSF013J11+ GCGGCGNCGATGTGGGTTTCCAAGGTTTCGGAG
____________________________________________________________
consensus AGTTGGGATCGGAAATTGGAAGAAGGGGCGGCGGCGATGTGGGTTTTCAAGGTTTCGGAG
. : . : . : . : . : . :
JMFF003G11+ AGATGGGTGGCGAGCGAAGGAGGGGCGAGAGAGACTTCTGGGTGGAGAGAATGGGAGAGA
JMSF005E17+ GGAGAGA
JMSF013J11+ AGATGGGTGNCGAGCGAAGGAGGGGCGAGAGAGACTTCTGGGTGGAGAGAATGGGAGAGA
____________________________________________________________
consensus AGATGGGTGGCGAGCGAAGGAGGGGCGAGAGAGACTTCTGGGTGGAGAGAATGGGAGAGA
. : . : . : . : . : . :
JMFF003G11+ GAGAGGTGGTGGGAGGGTTGGGTGGTGAACGGAGAGATGACGTGGTAGTGATCGAAGGAG
JMSF005E17+ GAGAGGTGGTGGGAGGNTTGGNTGGTGAACGGAGAGATGACGTGGTAGTGATCGAAGGAG
JMSF013J11+ GAGAGGTGGTGGGAGGGTTGGGTGGTGAACGGAGAGATGACGTGGTAGTGATCGAAGGAG
____________________________________________________________
consensus GAGAGGTGGTGGGAGGGTTGGGTGGTGAACGGAGAGATGACGTGGTAGTGATCGAAGGAG
. : . : . : . : . : . :
JMFF003G11+ ACGGNGGAGGAGATGAAGGAGGAGAGAGTGGCGGGAGAGGAGGAGGTGAAGGTGGTCCCC
JMSF005E17+ ACGGCGGAGGAGATGAAGGAGGAGAGAGTGGCGGGAGAGGAGGAGGTGAAGGTGGTCCCC
JMSF013J11+ ACGGCGGAGGAGATGAAGGAGGAGAGAGTGGCGGGAGAGGAGGAGGTGAAGGTGGTCCCC
JMSF008E07+ GAGGAGGTGAAGGTGGTCCCC
____________________________________________________________
consensus ACGGCGGAGGAGATGAAGGAGGAGAGAGTGGCGGGAGAGGAGGAGGTGAAGGTGGTCCCC
. : . : . : . : . : . :
JMFF003G11+ ACCAGCTNGACGGTGATTGGGACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
JMSF005E17+ ACCAGCTTGACGGTGATTGGGACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
JMSF011G23+ GACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
JMSF013J11+ ACCAGCTTGACGGTGATTGGGACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
JMSF008E07+ ACCAGCTTGACGGTGATTGGGACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
____________________________________________________________
consensus ACCAGCTTGACGGTGATTGGGACGGAGACTTGGAGGGAAAGGAGGGCGGCGATGGTGGCC
. : . : . : . : . : . :
JMFF003G11+ GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
JMSF005E17+ GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
JMSF011G23+ GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
JMSF013J11+ GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
JMSF008E07+ GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
____________________________________________________________
consensus GGCTGTTGAGGCGAGGTTTGGGAGAGAGTTTTCTTCAGATAGGAAGGTAGAGAAAGGAAG
. : . : . : . : . : . :
JMFF003G11+ GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
JMSF005E17+ GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
JMSF011G23+ GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
JMSF013J11+ GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
JMSF008E07+ GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
____________________________________________________________
consensus GAGTCATTGGTGGCTTGAGGGTCAACCCTGGATTGTTGAGCAAGAAAGGAGTCCAATCCC
. : . : . : . : . : . :
JMFF003G11+ AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
JMSF005E17+ AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
JMSF011G23+ AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
JMSF013J11+ AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
JMSF008E07+ AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
____________________________________________________________
consensus AAAATTGGGGCGGAGATGGTGACCGTGGCGGTGGCGAGGAGGCGGAGTAGGAGGAGGAAG
. : . : . : . : . : . :
JMFF003G11+ ACGACGGTCGGGAGCATTTNTAAGACCTGCGCCGATCCGGTTCAGTTATCGGAGCGAC
JMSF005E17+ ACGACGGTCGGGAGCATTTCTAAGACCTGCGCCGATCCGGTTCAGTTATCGGAGCGAC
JMSF011G23+ ACGACGGTCGGGAGCATTTCTAAGACCTGCGCCGATCCGGTTCAGT
JMSF013J11+ ACGACGGTCGGGAGCATTTCTAAGACCTGCGCCGATCCGGTTCAGTTATCGGAGCGAC
JMSF008E07+ ACGACGGTCGGGAGTATTTCTAAGACCTGCGCCGATCCGGTTCAGTTATCGGAGCGACTC
____________________________________________________________
consensus ACGACGGTCGGGAGCATTTCTAAGACCTGCGCCGATCCGGTTCAGTTATCGGAGCGACTC