Contig 002101:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF042L09Sequence647002101 (4)ref|XP_004238441.1|7e-76PREDICTED: U-box domain-containing protein 44 [Solanum lycopersicum] ref|XP_0103610019160gb|AJD77270.1|3e-44hypothetical protein, partial [Populus monticola]
JMFS070H11Sequence636002101 (4)ref|XP_004238441.1|6e-89PREDICTED: U-box domain-containing protein 44 [Solanum lycopersicum] ref|XP_0103
JMFS133G07Sequence642002101 (4)ref|XP_009786337.1|3e-82PREDICTED: U-box domain-containing protein 44-like [Nicotiana sylvestris]
JMSF007O22Sequence290002101 (4)ref|XP_009786337.1|2e-04PREDICTED: U-box domain-containing protein 44-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS070H11+              AGTTTCCAAAGCCTNGCACCGGACCCTGCGACTGCTGCTCCTTAACATGTCAATAAC
                      ____________________________________________________________
consensus                AGTTTCCAAAGCCTNGCACCGGACCCTGCGACTGCTGCTCCTTAACATGTCAATAAC
 
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JMFS070H11+           CATTGGTATCAGCTCAGCATTACGAATTACATGTCTATTCGACCGGCTTTTCTGACAGTA
JMFS133G07+                                                                      A
JMFF042L09+                                                                      A
                      ____________________________________________________________
consensus             CATTGGTATCAGCTCAGCATTACGAATTACATGTCTATTCGACCGGCTTTTCTGACAGTA
 
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JMFS070H11+           ATGCAATGCTCGCAGAATATCAGTCTCTGCGCTTCCTGGAGATAGCGACCTACGAGCCAT
JMFS133G07+           ATGCAATGCTCGAAGAATATCGGTCTCTGAGCTTCCCGGGGATAGCGACCTACGAGCCAT
JMFF042L09+           ATGCAATGCTCGCAGAATATCAGTCTCTGCGCTTCCTGGAGATAGCGACCTACGAGCCAT
                      ____________________________________________________________
consensus             ATGCAATGCTCGCAGAATATCAGTCTCTGCGCTTCCTGGAGATAGCGACCTACGAGCCAT
 
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JMFS070H11+           ATCAAGCTGAGCAGCTCCGTTCCGTGCATTCCATTCCTCAATGGTGTTCCTCAAAGCCAT
JMFS133G07+           ATCGAGCTGAGCAGCTTCGTTCCGGGCATTCCATTCCTCGATGGTGTTCCTCAAAGCCAT
JMFF042L09+           ATCAAGCTGAGCAGCTCCGTTCCGTGCATTCCATTCCTCAATGGTGTTCCTCAAAACCAT
                      ____________________________________________________________
consensus             ATCAAGCTGAGCAGCTCCGTTCCGTGCATTCCATTCCTCAATGGTGTTCCTCAAAGCCAT
 
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JMFS070H11+           GCTCGGATTAAGCTCTGTGCTTCTTAGCTCTCTTTGTGTCAAGGGACAAACAGGATTTCT
JMFS133G07+           GCTCGGGTTAAGCTCTGCGCTTCTTAGCTCTCTTTGTGTCAAGGGACAAACGGGGTTTCT
JMFF042L09+           GCTCGGATTAAGCTCTGTGCTTCTTAGCTCTCTTTGTGTCAAGGGACAAACAGGATTTCT
                      ____________________________________________________________
consensus             GCTCGGATTAAGCTCTGTGCTTCTTAGCTCTCTTTGTGTCAAGGGACAAACAGGATTTCT
 
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JMFS070H11+           TCCAATGTCTTTATATTCCTTGAACCATTTTTCAATCGCCTCTCTCTCGAAAGTGTGTCC
JMFS133G07+           TCCGTTTTCTTTACATTCCTTGAACCATTTCTCAATCGCCTCTCTCTCGAAAGTCTGTCC
JMFF042L09+           TCCAATGTCTTTATATTCCTTGAACCATTTTTCAATCGCCTCTCTCTCGAAAGTGTGTCC
                      ____________________________________________________________
consensus             TCCAATGTCTTTATATTCCTTGAACCATTTTTCAATCGCCTCTCTCTCGAAAGTGTGTCC
 
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JMFS070H11+           ATTTTCAAGGCTTACAGGATCACGCATTACTTGCTTTGTTAGCGGGCATATGAACACATC
JMFS133G07+           ATTTTCGAGGCTTACAGGATCACGCATTACTTGCTTTGTTAGCGGGCATATGAACGCATC
JMFF042L09+           ATTTTCAAGGCTTACAGGATCACGCATTACTTGCTTTGTTAGCGGGCATATGAACACATC
                      ____________________________________________________________
consensus             ATTTTCAAGGCTTACAGGATCACGCATTACTTGCTTTGTTAGCGGGCATATGAACACATC
 
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JMFS070H11+           ATATATAGGTTCTATATTCAGTCTCTCGAAATGGTAGCTCTCATCTGATGTACTACCAAC
JMFS133G07+           ATATATAGGCTCTATATGCAGTCTATCGAAATGGTAGCTCTCTTCTGATGTACTACCAAT
JMFF042L09+           ATATATAGGTTCTATATTCAGTCTCTCGAAATGGTAGCTCTCATCTGATGTACTACCAAC
JMSF007O22+                     TCTATATGCAGTCTATCGAAATGGTAGCTCTCTTCTGATGTACTACCAAT
                      ____________________________________________________________
consensus             ATATATAGGTTCTATATTCAGTCTCTCGAAATGGTAGCTCTCTTCTGATGTACTACCAAT
 
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JMFS070H11+           ATCATGATTCTCATCCCAGCATTCGGCCATCTAAACCTCTGCCTAGTGGGCAATTCTTGA
JMFS133G07+           GTCGTGATTCTCATCCCAGCATTCGGCCATCTAAACCTCTGCCTAGTGGGCAATTCTTGA
JMFF042L09+           ATCATGATTCTCATCCCAGCATTCGGCCATCTAAACCTCTGCCTAGTGGGCAATTCTTGA
JMSF007O22+           GTCGTGATTCTCATCCCAGCATTCGGCCATCTAAACCTCTGCCTAGTGGGCAATTCTTGA
                      ____________________________________________________________
consensus             GTCGTGATTCTCATCCCAGCATTCGGCCATCTAAACCTCTGCCTAGTGGGCAATTCTTGA
 
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JMFS070H11+           AACTCAGAGGCTAACTGGGAAGCTGAAAGCTTAAACCCTGCACCAAGATCCAGTTTTTGT
JMFS133G07+           AACTCAGAGGCTAACTGGGTAGCTGAAAGCTTAAACCCTGCATCAAGATCCAGTTTTTGT
JMFF042L09+           AACTCAGAGGCTAACTGGGAAGCTGAAAGCTTAAACCCTGCACCAAGATCCAGTTTTTGT
JMSF007O22+           AACTCAGAGGCTAACTGGGTAGCTGAAAGCTTAAACCCTGCATCAAGATCCAGTTTTTGT
                      ____________________________________________________________
consensus             AACTCAGAGGCTAACTGGGTAGCTGAAAGCTTAAACCCTGCATCAAGATCCAGTTTTTGT
 
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JMFS070H11+           GAACTGGGAAGCTTTCATTGTTCCATGACA                              
JMFS133G07+           GAACTGGGCAGCTTTCATTCTTCCATGACA                              
JMFF042L09+           GAACTGGGAAGCTTTCATTGTTCCATGACA                              
JMSF007O22+           GAACTGGGCAGCTTTCATTCTTCCATGACACCTTTAGAGAGGGGGACAAAACGGGAAGAA
                      ____________________________________________________________
consensus             GAACTGGGCAGCTTTCATTGTTCCATGACACCTTTAGAGAGGGGGACAAAACGGGAAGAA
 
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JMSF007O22+           AGAAGAAGAAGGAATAAGGTCCAAGTTTGTTGATCAGTGAATAAAACAAGCGAAAAACCC
                      ____________________________________________________________
consensus             AGAAGAAGAAGGAATAAGGTCCAAGTTTGTTGATCAGTGAATAAAACAAGCGAAAAACCC