Contig 002098:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028F22Sequence589002098 (8)ref|XP_004294039.1|4e-110PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves
JMFF047A22Sequence411002098 (8)ref|XP_004294039.1|3e-64PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves250013836 (7)
JMFF048A17Sequence527002098 (8)ref|XP_004294039.1|3e-90PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves
JMFS007F12Sequence614002098 (8)emb|CDP06988.1|5e-118unnamed protein product [Coffea canephora]
JMSF007M05Sequence388002098 (8)emb|CDP06988.1|2e-48unnamed protein product [Coffea canephora]710013836 (7)
JMSF015O24Sequence259002098 (8)emb|CDP15354.1|2e-38unnamed protein product [Coffea canephora]708013836 (7)
JMSF025B21Sequence638002098 (8)emb|CDP06988.1|7e-117unnamed protein product [Coffea canephora]796013836 (7)
JMSF030C05Sequence653002098 (8)ref|XP_004294039.1|9e-78PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves670013836 (7)

Alignment

This contig is upended


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JMFS007F12+                                                                    CCA
JMSF025B21+                                                                    CCA
JMFF028F22+                                                                    CCA
JMFF048A17+                       TCACGAAAATCAGTTACTGGAGAGAAATCAACAATGATAGGTCTTCCA
                      ____________________________________________________________
consensus                         TCACGAAAATCAGTTACTGGAGAGAAATCAACAATGATAGGTCTTCCA
 
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JMFS007F12+           GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMFF047A22+                                                                   AAAC
JMSF025B21+           GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMFF028F22+           GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMSF030C05+                                                                    AAC
JMFF048A17+           GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
                      ____________________________________________________________
consensus             GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
 
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JMFS007F12+           TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF047A22+           TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMSF025B21+           TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF028F22+           TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMSF030C05+           TGAACATAAAAATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF048A17+           TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
                      ____________________________________________________________
consensus             TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
 
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JMFS007F12+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF047A22+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAACTCCTCGAAGTGTTCT
JMSF025B21+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF028F22+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMSF030C05+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF048A17+           ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMSF007M05+                                                         CCTCGAAGTGTTCT
                      ____________________________________________________________
consensus             ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
 
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JMFS007F12+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF047A22+           TGCATCTTATGAGGATCGATTGGGCGGCTTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF025B21+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF028F22+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF030C05+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF048A17+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF015O24+                                             CGTCGACGCCGGGGGTGATCATGTCG
JMSF007M05+           TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
                      ____________________________________________________________
consensus             TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
 
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JMFS007F12+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF047A22+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF025B21+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF028F22+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF030C05+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF048A17+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF015O24+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF007M05+           GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
                      ____________________________________________________________
consensus             GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
 
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JMFS007F12+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF047A22+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF025B21+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF028F22+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF030C05+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF048A17+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF015O24+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF007M05+           CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
                      ____________________________________________________________
consensus             CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
 
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JMFS007F12+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF047A22+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF025B21+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF028F22+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF030C05+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF048A17+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF015O24+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF007M05+           CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
                      ____________________________________________________________
consensus             CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
 
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JMFS007F12+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACA                          
JMFF047A22+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGT             
JMSF025B21+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCT           
JMFF028F22+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTATCTG          
JMSF030C05+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAAC    
JMFF048A17+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAAC    
JMSF015O24+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGA        
JMSF007M05+           AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAACAATC
                      ____________________________________________________________
consensus             AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAACAATC