Contig 002098:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028F22Sequence589002098 (8)ref|XP_004294039.1|4e-110PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves
JMFF047A22Sequence411002098 (8)ref|XP_004294039.1|3e-64PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves250013836 (7)
JMFF048A17Sequence527002098 (8)ref|XP_004294039.1|3e-90PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves
JMFS007F12Sequence614002098 (8)emb|CDP06988.1|5e-118unnamed protein product [Coffea canephora]
JMSF007M05Sequence388002098 (8)emb|CDP06988.1|2e-48unnamed protein product [Coffea canephora]710013836 (7)
JMSF015O24Sequence259002098 (8)emb|CDP15354.1|2e-38unnamed protein product [Coffea canephora]708013836 (7)
JMSF025B21Sequence638002098 (8)emb|CDP06988.1|7e-117unnamed protein product [Coffea canephora]796013836 (7)
JMSF030C05Sequence653002098 (8)ref|XP_004294039.1|9e-78PREDICTED: splicing factor U2af small subunit B-like [Fragaria vesca subsp. ves670013836 (7)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS007F12+ CCA
JMSF025B21+ CCA
JMFF028F22+ CCA
JMFF048A17+ TCACGAAAATCAGTTACTGGAGAGAAATCAACAATGATAGGTCTTCCA
                      ____________________________________________________________
consensus TCACGAAAATCAGTTACTGGAGAGAAATCAACAATGATAGGTCTTCCA
 
. : . : . : . : . : . :
JMFS007F12+ GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMFF047A22+ AAAC
JMSF025B21+ GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMFF028F22+ GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
JMSF030C05+ AAC
JMFF048A17+ GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
                      ____________________________________________________________
consensus GCATAGAACCTTCCTGAGAGATTTTTCAGAGCATTTGCAGCCTGCTCCTCTTCTCGAAAC
 
. : . : . : . : . : . :
JMFS007F12+ TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF047A22+ TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMSF025B21+ TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF028F22+ TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMSF030C05+ TGAACATAAAAATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
JMFF048A17+ TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
                      ____________________________________________________________
consensus TGAACATAAACATTGCCCACCATGTGGTCAGCCAGATTATCACAAACATTCAGACTCTCA
 
. : . : . : . : . : . :
JMFS007F12+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF047A22+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAACTCCTCGAAGTGTTCT
JMSF025B21+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF028F22+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMSF030C05+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMFF048A17+ ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
JMSF007M05+ CCTCGAAGTGTTCT
                      ____________________________________________________________
consensus ATCTCACCATACTTGCTCAATTCCTCAAACAAATCTTCATAAAATTCCTCGAAGTGTTCT
 
. : . : . : . : . : . :
JMFS007F12+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF047A22+ TGCATCTTATGAGGATCGATTGGGCGGCTTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF025B21+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF028F22+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF030C05+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMFF048A17+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
JMSF015O24+ CGTCGACGCCGGGGGTGATCATGTCG
JMSF007M05+ TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
                      ____________________________________________________________
consensus TGCATCTTATGAGGATCGATTGGGCGGCCTTGGGCGTCGACGCCGGGGGTGATCATGTCG
 
. : . : . : . : . : . :
JMFS007F12+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF047A22+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF025B21+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF028F22+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF030C05+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMFF048A17+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF015O24+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
JMSF007M05+ GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
                      ____________________________________________________________
consensus GGGCGCTGGTACATGTTGGAGAGGAGGATGGTGGGGCTGATGCTGGGCTTGGTATGGAGC
 
. : . : . : . : . : . :
JMFS007F12+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF047A22+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF025B21+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF028F22+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF030C05+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMFF048A17+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF015O24+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
JMSF007M05+ CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
                      ____________________________________________________________
consensus CTGGAGCAGCGGTCGCCGTGACGACACGCGCCGATCTTGAAGTAGAAGGGGCAGTTCACC
 
. : . : . : . : . : . :
JMFS007F12+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF047A22+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF025B21+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF028F22+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF030C05+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMFF048A17+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF015O24+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
JMSF007M05+ CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
                      ____________________________________________________________
consensus CTGTCCTTCTCCGTTCCGAATATCGATGCCAAGTGCTCCGCCATTGAAACCGAGACTTCA
 
. : . : . : . : . : . :
JMFS007F12+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACA
JMFF047A22+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGT
JMSF025B21+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCT
JMFF028F22+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTATCTG
JMSF030C05+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAAC
JMFF048A17+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAAC
JMSF015O24+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGA
JMSF007M05+ AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAACAATC
                      ____________________________________________________________
consensus AACTTCAAATTCAGCTGCTGTCTCTCTCTCTACACTTTATCCCGTGTCTGGAGAACAATC