Contig 002097:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008B14Sequence347002097 (7)660013628 (3)emb|CDP18436.1|7e-79unnamed protein product [Coffea canephora]
JMFN043M10Sequence608002097 (7)gb|KHN07303.1|64.7Katanin p80 WD40 repeat-containing subunit B1 like 1 [Glycine soja]
JMFN046O01Sequence545002097 (7)
JMSF007K09Sequence501002097 (7)841002097 (7)
JMSF026D19Sequence664002097 (7)gb|KHN07303.1|61.2Katanin p80 WD40 repeat-containing subunit B1 like 1 [Glycine soja]854002097 (7)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026D19- AAAAGTAAGAACAAATACTGATCACTTTGTCTAGGGCATCTAAACTTTGTCACACCAAAA
rJMSF007K09- AATACTGATCACTTTGTCTAGGGCATCTAAACTTTGTCACACCAAAA
                      ____________________________________________________________
consensus AAAAGTAAGAACAAATACTGATCACTTTGTCTAGGGCATCTAAACTTTGTCACACCAAAA
 
. : . : . : . : . : . :
rJMSF026D19- TGAATGTAAGTAACCTCTACAGAAGCTGAGAACAGTGCAAATTCTTATATCAGAAAAACA
JMFN046O01+ AGAAAAACA
JMFF008B14+ GAATGTAAGTAACCTNTACAGAAGNTGAGAACAGTGCAAACTCTTAGAT-AGAAAAACA
rJMSF007K09- TGAATGTAAGTAACCTCTACAGAAGCTGAGAACAGTGCAAATTCTTATATCAGAAAAACA
                      ____________________________________________________________
consensus TGAATGTAAGTAACCTCTACAGAAGCTGAGAACAGTGCAAATTCTTATATCAGAAAAACA
 
. : . : . : . : . : . :
rJMSF026D19- TAAGAACTAGTTAATGCTTTCATCTCAAAAAAGTTAAGGCCATCATATATGTATTTAACA
JMFN046O01+ TAAGAACTAGTTAATGCTTTCATCTCAAAAAAGTTAAGGCCATCATATATGTATTTAACA
JMFF008B14+ CAAGAACTAGTTAATGCTTTCATCTCAAAAAAGTTAAGGCCATCATCTATGT
rJMSF007K09- TAAGAACTAGTTAATGCTTTCATCTCAAAAAAGTTAAGGCCATCATATATGTATTTAACA
                      ____________________________________________________________
consensus TAAGAACTAGTTAATGCTTTCATCTCAAAAAAGTTAAGGCCATCATATATGTATTTAACA
 
. : . : . : . : . : . :
rJMSF026D19- TCAGAATAGGCTACTCAAAGGCAGTTTGAATGAAGCTTGCAACCTCCCCCATTTTGTCCT
JMFN046O01+ TCAGAATAGGCTACTCAAAGGCAGTTTGAATGAAGCTTGCAACCTCCCCCATTTTGTCCT
rJMSF007K09- TCAGAATAGGCTACTCAAAGGCAGTTTGAATGAAGCTTGCAACCTCCCCCATTTTGTCCT
                      ____________________________________________________________
consensus TCAGAATAGGCTACTCAAAGGCAGTTTGAATGAAGCTTGCAACCTCCCCCATTTTGTCCT
 
. : . : . : . : . : . :
rJMSF026D19- TCAAAGCTTGTTTCATCGAAGCTGTCCTCTGAACCTCAATAGTCTCCGCTTCTAGTTGGG
JMFN046O01+ TCAAAGCTTGTTTCATCGAAGCTGTCCTCTGAACCTCAATAGTCTCCGCTTCTAGTTGGG
rJMSF007K09- TCAAAGCTTGTTTCATCGAAGCTGTCCTCTGAACCTCAATAGTCTCCGCTTCTAGTTGGG
                      ____________________________________________________________
consensus TCAAAGCTTGTTTCATCGAAGCTGTCCTCTGAACCTCAATAGTCTCCGCTTCTAGTTGGG
 
. : . : . : . : . : . :
rJMSF026D19- TACTTAAAGCAGCTTTCTTAAGCGTCATATTCAAAATATCATTATTTAAGGTACCCAACT
JMFN046O01+ TACTTAAAGCAGCTTTCTTAAGCGTCATATTCAAAATATCATTATTTAAGGTACCCAACT
rJMSF007K09- TACTTAAAGCAGCTTTCTTAAGCGTCATATTCAAAATATCATTATTTAAGGTACCCAACT
                      ____________________________________________________________
consensus TACTTAAAGCAGCTTTCTTAAGCGTCATATTCAAAATATCATTATTTAAGGTACCCAACT
 
. : . : . : . : . : . :
rJMSF026D19- GATCTTGACTGGTTTTAATATCTGCATCTAGTTGGTGTAGTTGAACAATCAGGTCATTAT
JMFN046O01+ GATCTTGACTGGTTTTAATATCTGCATCTAGTTGGTGTAGTTGAACAATCAGGTCATTAT
rJMSF007K09- GATCTTGACTGGTTTTAATATCTGCATCTAGTTGGTGTAGTTGAACAATCAGGTCATTAT
                      ____________________________________________________________
consensus GATCTTGACTGGTTTTAATATCTGCATCTAGTTGGTGTAGTTGAACAATCAGGTCATTAT
 
. : . : . : . : . : . :
rJMSF026D19- ACAGCCGTCCTTCCGCTAAAACGGTTTGCTCTAACTCCTGAAGATGGCGCCGTAACACAG
JMFN046O01+ ACAGCCGTCCTTCCGCTAAAACGGTTTGCTCTAACTCCTGAAGATGGCGCCGTAACACAG
rJMSF007K09- ACAGCCGTCCTTCCGCTAAAACGGTTTGCTCTAACTCCTGAAGATGGCGCCGTAACACAG
                      ____________________________________________________________
consensus ACAGCCGTCCTTCCGCTAAAACGGTTTGCTCTAACTCCTGAAGATGGCGCCGTAACACAG
 
. : . : . : . : . : . :
rJMSF026D19- CAGAATCCTGCGTATTAGCCATGAGGTAACTCAAATCCTGACGGACGAAGACCGGTGATT
JMFN046O01+ CAGAATCCTGCGTATTAGCCATGAGGTAACTCAAATCCTGACGGACGAAGACCGGTGATT
rJMSF007K09- CAGAATCCTGCGTATTAGCCATGAGGTAACTCAAATCCTGACGGACGAAGACCGGTGATT
                      ____________________________________________________________
consensus CAGAATCCTGCGTATTAGCCATGAGGTAACTCAAATCCTGACGGACGAAGACCGGTGATT
 
. : . : . : . : . : . :
rJMSF026D19- GCGATCGAGGACGACGAGCGAAGACGGAGCGAAGACGGATGACTGAAGGAGCGATCAAGG
JMFN046O01+ GCGATCGAGGACGACGAGCGAAGACGGAGCGAAGACGGATGACTGAAGGAGCGATCAAGG
rJMSF007K09- GCGATCGAGGACGACGAGCGAAGACGGAGCGAAGACGGATGACTGAAGGAGCGATCAAGG
                      ____________________________________________________________
consensus GCGATCGAGGACGACGAGCGAAGACGGAGCGAAGACGGATGACTGAAGGAGCGATCAAGG
 
. : . : . : . : . : . :
rJMSF026D19- ACGACGAGCGAAGACGATGATGGAGCGACCTGGCTCAAATTCTGACGGACGAAGACCGGT
JMFN046O01+ ACGACGAGCGAAGACGATGATGGAGCGA
rJMSF007K09- ACGACGAGCGAAGACGATGATGGAGCGACCTGGCTCAAATTCTGACGGACGAAGACCGGT
                      ____________________________________________________________
consensus ACGACGAGCGAAGACGATGATGGAGCGACCTGGCTCAAATTCTGACGGACGAAGACCGGT
 
. : . : . : . : . : . :
rJMSF026D19- GAGTCGATCGAGGACGACGAGCGAAGACGAATGACTGAAGGAGCGATCAAGGACGACGAG
rJMSF007K09- GAGTCGATCGAGGACGACGAGCGAAGACGAATGACTGAAGGAGCGATCAAGGACGACGAG
JMFN043M10+ GAGCGAAGACGAATGACTGAAGGAGCGATCAAGGACGACGAG
                      ____________________________________________________________
consensus GAGTCGATCGAGGACGACGAGCGAAGACGAATGACTGAAGGAGCGATCAAGGACGACGAG
 
. : . : . : . : . : . :
rJMSF026D19- CGAAGACGATGATGGAGCGACCTGGCTCAAACGGACGAANACCGGTGATTCGATCGAGGA
rJMSF007K09- CGAAGACGATGATGGAGCGACCTGGCTCAAACGGACGAAGACCGGTGATNCGATCGAGGA
JMFN043M10+ CGAAGACGATGATGGAGCGACCTGGCTCAAACGGACGAAGACCGGTGATTCGATCGAGGA
                      ____________________________________________________________
consensus CGAAGACGATGATGGAGCGACCTGGCTCAAACGGACGAAGACCGGTGATTCGATCGAGGA
 
. : . : . : . : . : . :
rJMSF026D19- CGACGAGCGAAGACGGAGGAAGGAGCAGCGAAAACGGATGACTGATTTAGGAGCGATTGA
rJMSF007K09- CGACNAGCGAAGACGGAGGAAGGAGCANCGAAAACGGATGACTGATTNAGGAGCGATTGA
JMFN043M10+ CGACGAGCGAAGACGGAGGAAGGAGCAGCGAAGACGGATGACTGATTTAGGAGCGATTGA
                      ____________________________________________________________
consensus CGACGAGCGAAGACGGAGGAAGGAGCAGCGAAAACGGATGACTGATTTAGGAGCGATTGA
 
. : . : . : . : . : . :
rJMSF026D19- GNACGACGAGCGAA
rJMSF007K09- GGACGACNAGCGAA
JMFN043M10+ GGACGACGAGCGAAACGGATGAAGACGGATGAAAGAGCCGCTGGATCTTCGACCGGTGAG
                      ____________________________________________________________
consensus GGACGACGAGCGAAACGGATGAAGACGGATGAAAGAGCCGCTGGATCTTCGACCGGTGAG
 
. : . : . : . : . : . :
JMFN043M10+ AGAGTCGAAGATCTTTTTGAATCTTCTAGATCCCACACCTTTATTAACCTGGATGAAGAT
JMSF026D19+ TTTTTGAATCTTCTAGATCCCACACCTTTATTAACCTGGATGAAGAT
                      ____________________________________________________________
consensus AGAGTCGAAGATCTTTTTGAATCTTCTAGATCCCACACCTTTATTAACCTGGATGAAGAT
 
. : . : . : . : . : . :
JMFN043M10+ CCAGCAGTTACTAAAATCTCAGCTGAATCAAAGGTTATAGACTCTACGGAACTTGTGTGG
JMSF026D19+ CCAGCAGTTACTAAAATCTCAGCTGAATCAAAAGTTATAGACTCTACGGAACTTGTGTGG
                      ____________________________________________________________
consensus CCAGCAGTTACTAAAATCTCAGCTGAATCAAAGGTTATAGACTCTACGGAACTTGTGTGG
 
. : . : . : . : . : . :
JMFN043M10+ CCAGATAGGGCCTTTATCAATTTTGTCTTAGATTTTGGGATTTTTGGAGAGGAACTTTTC
JMSF026D19+ CCAGATAGGGCCTTTATCAATTTTGTCTTAGATTTTGGGATTTTTGGAGAGGAACTTTTC
JMSF007K09+ TTTTGGAGAGGAACTTTTC
                      ____________________________________________________________
consensus CCAGATAGGGCCTTTATCAATTTTGTCTTAGATTTTGGGATTTTTGGAGAGGAACTTTTC
 
. : . : . : . : . : . :
JMFN043M10+ GACTTCGTGATTGCTCTATATGTACACCGTCAAATCTTTGGAATGGCTTTCAACTATTAT
JMSF026D19+ GACTTCGTGATTGCTCTATATGTACACCGTCAAATCTTTGGAATGGCTTTCAACTCTTAT
JMSF007K09+ GACTTCGTGATTGCTCTATATGTACACCGTCAAATCTTNGGAATGGCTTTCAACTCTTAT
                      ____________________________________________________________
consensus GACTTCGTGATTGCTCTATATGTACACCGTCAAATCTTTGGAATGGCTTTCAACTCTTAT
 
. : . : . : . : . : . :
JMFN043M10+ TTTTCTTCCTTCACTCTCAGGTGTACATAGATCAGGTGATGTAGACAGCCTATGTATAGC
JMSF026D19+ TTTTCTTCCTTCACTCTCAGGTGTACATAGATCAGGTGATGTAGACAGCCTATGTATAGC
JMSF007K09+ TTTTCTTCCTTCACTCTCAGGTGTACATAGATCAGGTGATGTAGACAGCCTATGTATAGC
                      ____________________________________________________________
consensus TTTTCTTCCTTCACTCTCAGGTGTACATAGATCAGGTGATGTAGACAGCCTATGTATAGC
 
. : . : . : . : . : . :
JMFN043M10+ TATGGATGTTGAGTTTTCTCTTTCGATGCAACTTATGTTGAAGACGGTACGAAGGACTGC
JMSF026D19+ TATGGATGTTGAGTTTTCTCTTTCGATGCAACTTATGTTGAAGACGGTACGAAGGACTGC
JMSF007K09+ TATGGATGTTGAGTTTTCTCTTTCGATGCAACTTATGTTGAAGACGGTACGAAGGACTGC
                      ____________________________________________________________
consensus TATGGATGTTGAGTTTTCTCTTTCGATGCAACTTATGTTGAAGACGGTACGAAGGACTGC
 
. : . : . : . : . : . :
JMFN043M10+ AATAATTGGTTTACGATGAT
JMSF026D19+ AATAATTGGTTTACGATGATTATTTTAGCTAATTAGGTGCGAATTGGAGTTAAATTTGGT
JMSF007K09+ AATAATTGGTTTACGATGATTATTTTAGCTAATTAGGTGCGAATTGGAGTTAAATTTGGT
                      ____________________________________________________________
consensus AATAATTGGTTTACGATGATTATTTTAGCTAATTAGGTGCGAATTGGAGTTAAATTTGGT
 
. : . : . : . : . : . :
JMSF026D19+ GTTAGATATTACAGGGTAAAGTGAGCTTTTGGTTTTTGATGGATTTGTATCCATTTCTAT
JMSF007K09+ GTTAGATATTACAGGGTAAAGTGAGCTTTTGGTTTTTGATGGATTTGTATCCATTTCTAT
                      ____________________________________________________________
consensus GTTAGATATTACAGGGTAAAGTGAGCTTTTGGTTTTTGATGGATTTGTATCCATTTCTAT
 
. : . : . : . : . : . :
JMSF026D19+ GTACGGAGTGGTCGTCTATGGCTTTGCGAGGAAGACGACCACGAAGGGCAGAAATGGGGA
JMSF007K09+ GTACGGAGTGGTCGTCTATGGCTTTGCGAGGAAGACGACCACGAAGGGCAGAAATGGGGA
                      ____________________________________________________________
consensus GTACGGAGTGGTCGTCTATGGCTTTGCGAGGAAGACGACCACGAAGGGCAGAAATGGGGA
 
. : . : . : . : . : . :
JMSF026D19+ AGAAGACTGGGTTGAACCGATGGATTACGGAGTGAGGTGCTCTTTTGATTTTCTATGGCT
JMSF007K09+ AGAAGACTGGGTTGAACCGATGGATTACGGAGTGAGGTGCTCTTTTGATTTTCTATGGCT
                      ____________________________________________________________
consensus AGAAGACTGGGTTGAACCGATGGATTACGGAGTGAGGTGCTCTTTTGATTTTCTATGGCT
 
. : . : . : . : . : . :
JMSF026D19+ TCGTCTCCATTTCTGTGGAGTGTGGATGGATTGTCGGTTTAGGGAAGAAGACGAAGTGCC
JMSF007K09+ TCGTCTCCATTTCTGTGGAGTGTGGATGGATTGTCGGTTTAGGGAAGAAGACGAAGTGCC
                      ____________________________________________________________
consensus TCGTCTCCATTTCTGTGGAGTGTGGATGGATTGTCGGTTTAGGGAAGAAGACGAAGTGCC