Contig 002096:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007I02Sequence376002096 (3)ref|XP_009789916.1|2e-34PREDICTED: putative deoxyribonuclease TATDN1 [Nicotiana sylvestris]792002096 (3)ref|XP_010316694.1|3e-61PREDICTED: putative deoxyribonuclease TATDN1 isoform X2 [Solanum lycopersicum]
JMSF029K09Sequence676002096 (3)ref|XP_009789916.1|3e-101PREDICTED: putative deoxyribonuclease TATDN1 [Nicotiana sylvestris]707017180ref|XP_010316694.1|2e-46PREDICTED: putative deoxyribonuclease TATDN1 isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF007I02-                                               AGTTACATGTCTTGCAATACAAG
                      ____________________________________________________________
consensus                                                  AGTTACATGTCTTGCAATACAAG
 
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rJMSF007I02-          TATGAAGAAGATCCAGGGGGCTCAGGCACAGACAGTGTGTGCCTCGGTTACTTTAAGAGA
                      ____________________________________________________________
consensus             TATGAAGAAGATCCAGGGGGCTCAGGCACAGACAGTGTGTGCCTCGGTTACTTTAAGAGA
 
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rJMSF007I02-          AAGCAATCTGAACTAATCTCGAAGCTAAAATGCACATATCAACGAGAGAGGTATCCCGAA
                      ____________________________________________________________
consensus             AAGCAATCTGAACTAATCTCGAAGCTAAAATGCACATATCAACGAGAGAGGTATCCCGAA
 
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rJMSF007I02-          GATTATAATGTATTGTGAGATTTTAATATATAGTTCCATGAAAGAATTGAAATGAATACT
                      ____________________________________________________________
consensus             GATTATAATGTATTGTGAGATTTTAATATATAGTTCCATGAAAGAATTGAAATGAATACT
 
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rJMSF007I02-          AGAATAGTAATTGCATTGCATCTAGCAATTAAATGACCACTGAAGTTGAAGTTTGTTTAC
                      ____________________________________________________________
consensus             AGAATAGTAATTGCATTGCATCTAGCAATTAAATGACCACTGAAGTTGAAGTTTGTTTAC
 
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rJMSF007I02-          TCCTTCAATGACGCAATATCTAAACAAAAGGAACACAATCACTACCTCACTGCTGCACTT
                      ____________________________________________________________
consensus             TCCTTCAATGACGCAATATCTAAACAAAAGGAACACAATCACTACCTCACTGCTGCACTT
 
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rJMSF007I02-          TTGAACCTTCGTATGAGAACAGCTGCCTTGCATTTGAAAAGCTTAAATCAGTGAGTTTTT
                      ____________________________________________________________
consensus             TTGAACCTTCGTATGAGAACAGCTGCCTTGCATTTGAAAAGCTTAAATCAGTGAGTTTTT
 
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rJMSF007I02-          CTTTGCTCATATCAAGTAAAGATGCTACGTAGTGAAGAACATGATGGATGTTGGCTGGAT
                      ____________________________________________________________
consensus             CTTTGCTCATATCAAGTAAAGATGCTACGTAGTGAAGAACATGATGGATGTTGGCTGGAT
 
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rJMSF007I02-          GGTTTAGGGTTTCTTTTGGCAGTGACGAAGAAGGCAAAGTTTTGGCGGAATTATCAGTTT
                      ____________________________________________________________
consensus             GGTTTAGGGTTTCTTTTGGCAGTGACGAAGAAGGCAAAGTTTTGGCGGAATTATCAGTTT
 
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rJMSF007I02-          CAGGAATTGGAATTTGTCCTTCACCACCACTTTCTTTAGAAGCAGAGGTTTCCTCTTCTA
                      ____________________________________________________________
consensus             CAGGAATTGGAATTTGTCCTTCACCACCACTTTCTTTAGAAGCAGAGGTTTCCTCTTCTA
 
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rJMSF007I02-          TCAAAAACAAAGTGTCTGGATTGTTTAATTTTGGAAAAGCATCGGGTGCATCTGTCTCCA
                      ____________________________________________________________
consensus             TCAAAAACAAAGTGTCTGGATTGTTTAATTTTGGAAAAGCATCGGGTGCATCTGTCTCCA
 
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rJMSF007I02-          ACAAAATCCTTTCGATAGGAATTGAACGTAACATCTTCTTTGCCTTGCTTTCTTTCAAAG
                      ____________________________________________________________
consensus             ACAAAATCCTTTCGATAGGAATTGAACGTAACATCTTCTTTGCCTTGCTTTCTTTCAAAG
 
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rJMSF007I02-          ACATCAGAAACCCAGAGAACGAGAAGTAAGCACCAAGCTTAGCAAATTCAGGAACCATTT
JMSF029K09+                                                       AATTCAGGAACCATTT
                      ____________________________________________________________
consensus             ACATCAGAAACCCAGAGAACGAGAAGTAAGCACCAAGCTTAGCAAATTCAGGAACCATTT
 
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rJMSF007I02-          CAGCAGAGCCAAGGAAAGAATGAAGGATAACTCCNGAAGG                    
JMSF029K09+           CAGCAGAGCCAAGGAAAGAATGAAGGATAACTCCAGAAGGGAACGGACCCATAGATTTCA
                      ____________________________________________________________
consensus             CAGCAGAGCCAAGGAAAGAATGAAGGATAACTCCAGAAGGGAACGGACCCATAGATTTCA
 
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JMSF029K09+           GTATCTCAAGAAGATCCCCATAAGCTCGGACACAATGAATAGACGCGGGTCTTTTCAACT
                      ____________________________________________________________
consensus             GTATCTCAAGAAGATCCCCATAAGCTCGGACACAATGAATAGACGCGGGTCTTTTCAACT
 
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JMSF029K09+           CTTNGGCTAGCTGAAGTTGTTGGCGGAAGACTTCAACCTGATCAGCAAAATCAATCTTCT
                      ____________________________________________________________
consensus             CTTNGGCTAGCTGAAGTTGTTGGCGGAAGACTTCAACCTGATCAGCAAAATCAATCTTCT
 
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JMSF029K09+           TTCCCATTGAACCTTTATCCAAACCAATCTCACCAACCGCAGCTTCAGGTGTAGCCTCAA
                      ____________________________________________________________
consensus             TTCCCATTGAACCTTTATCCAAACCAATCTCACCAACCGCAGCTTCAGGTGTAGCCTCAA
 
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JMSF029K09+           AGTATTCCTTCAATGTTTTCAACCAATTAGGTGTCCTCTCGGCAATGAACCAGGGATGGA
JMSF007I02+                                                       ATGAACCAGGGATGGA
                      ____________________________________________________________
consensus             AGTATTCCTTCAATGTTTTCAACCAATTAGGTGTCCTCTCGGCAATGAACCAGGGATGGA
 
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JMSF029K09+           TCCCGAAATTTGGAACAACACAAGGATAGCTGTTGCTCATCTCCTTGACTATGTGCCAAT
JMSF007I02+           TCCCGAAATTTGGAACAACACAAGGATAGCTGTTGCTCATCTCCTTGACTATGTGCCAAT
                      ____________________________________________________________
consensus             TCCCGAAATTTGGAACAACACAAGGATAGCTGTTGCTCATCTCCTTGACTATGTGCCAAT
 
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JMSF029K09+           CCTTCTCACACACACCGTTCACCGCAAAATGAACCACTCCTGTATCAAGAGTGGTCCTAA
JMSF007I02+           CCTTCTCACACACACCGTTCACCGCAAAATGAACCACTCCTGTATCAAGAGTGGTCCTAA
                      ____________________________________________________________
consensus             CCTTCTCACACACACCGTTCACCGCAAAATGAACCACTCCTGTATCAAGAGTGGTCCTAA
 
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JMSF029K09+           TTAATTGTGGGACCATATTAAAGATCTTAGGGTCTTGGAGATGACAATGAGCATCAAAAA
JMSF007I02+           TTAATTGTGGGACCATATTAAAGATCTTAGGGTCTTGGAGATGACAATGAGCATCAAAAA
                      ____________________________________________________________
consensus             TTAATTGTGGGACCATATTAAAGATCTTAGGGTCTTGGAGATGACAATGAGCATCAAAAA
 
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JMSF029K09+           GTTTCATTTCTGGCCTATATCAACTGCTGCAACACTCTTCTTTGTCTTTACTTTCCAGCA
JMSF007I02+           GTTTCATTTCTGGCCTATATCAACTGCTGCAACACTCTTCTTTGTCTTTATTTTCCAGCA
                      ____________________________________________________________
consensus             GTTTCATTTCTGGCCTATATCAACTGCTGCAACACTCTTCTTTGTCTTTATTTTCCAGCA
 
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JMSF029K09+           GCCTTCTGTATCCTAAAATGCACACTTTTGCAAATCCACTCCTATAGTGTAACAGCTGCA
JMSF007I02+           GCCTTCTGTATCCTAAAATGCACACTTTTGCAAATCCACTCCTATAGTGTAACAGCTGCA
                      ____________________________________________________________
consensus             GCCTTCTGTATCCTAAAATGCACACTTTTGCAAATCCACTCCTATAGTGTAACAGCTGCA
 
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JMSF029K09+           GCACTTATCTATGGAACTTAAAGGCTTAAAGCCTCGAGGCTCGAACTATCATCAGCA   
JMSF007I02+           GCACTTATCTATGGAACTTAAAGGCTTAAAGCCTCGAGGCTCGAACTATCATCAGCACCC
                      ____________________________________________________________
consensus             GCACTTATCTATGGAACTTAAAGGCTTAAAGCCTCGAGGCTCGAACTATCATCAGCACCC