| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF035G15 | Sequence | 578 | 002088 (5) | gb|AFU50380.1| | 9e-82 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 709 | 007047 (4) | gb|AFU50382.1| | 1e-105 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMFS101H02 | Sequence | 606 | 002088 (5) | gb|AFU50380.1| | 3e-97 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | |||||
| JMSF006G23 | Sequence | 251 | 002088 (5) | gb|AFU50380.1| | 4e-11 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 205 | 007047 (4) | gb|AFU50382.1| | 4e-35 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMSF010E22 | Sequence | 310 | 002088 (5) | gb|AFU50380.1| | 1e-15 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 751 | 007047 (4) | gb|AFU50382.1| | 4e-123 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
| JMSF039B03 | Sequence | 637 | 002088 (5) | gb|AFU50380.1| | 4e-98 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform | 856 | 007047 (4) | gb|AFU50382.1| | 9e-145 | chloroplast ribulose bisphosphate carboxylase/oxygenase activase large isoform |
This contig is upended
. : . : . : . : . : . :
JMFS101H02+ ACAAGCTCACACTGGAAAGACTTCCCTTGA
JMSF039B03+ CCGGAACACAAGCTCACACTGGAAAGACTTCCCTTGA
____________________________________________________________
consensus CCGGAACACAAGCTCACACTGGAAAGACTTCCCTTGA
. : . : . : . : . : . :
JMFS101H02+ CCTNTGCCTCCCCAAACACCCAAGATGAGAGGAACCTTAATGTTGGGCAGTTTCAAGAAG
JMFF035G15+ AGATGAGAGGAACCTTAATGTTGGGCAGTTTCAAGAAG
JMSF039B03+ CCTTTGCCTCCCCAAACACCCAAGATGAGAGGAACCTTAATGTTGGGCAGTTTCAAGAAG
____________________________________________________________
consensus CCTTTGCCTCCCCAAACACCCAAGATGAGAGGAACCTTAATGTTGGGCAGTTTCAAGAAG
. : . : . : . : . : . :
JMFS101H02+ TTCTTGGTGATATGGACAACAAGCTTGTCCATGAAAGCTGGGGCAATGTAAAATCCATCC
JMFF035G15+ TTCTTGGTGATATGGACAACAAGCTTGTCCATGAAAGCTGGGGCAATGTAAAATCCATCC
JMSF039B03+ TTCTTGGTGATATGGACAACAAGCTTGTCCATGAAAGCTGGGGCAATGTAAAATCCATCC
____________________________________________________________
consensus TTCTTGGTGATATGGACAACAAGCTTGTCCATGAAAGCTGGGGCAATGTAAAATCCATCC
. : . : . : . : . : . :
JMFS101H02+ AATGTGTTATCGATATTGTATGCGCGAAGGCCCTGACTGATGTATTCGTAAGAGCTAAGG
JMFF035G15+ AATGTGTTATCGATATTGTATGCGCGAAGGCCCTGACTGATGTATTCGTAAGAGCTAAGG
JMSF039B03+ AATGTGTTATCGATATTGTATGCGCGAAGGCCCTGACTGATGTATTCGTAAGAGCTAAGG
____________________________________________________________
consensus AATGTGTTATCGATATTGTATGCGCGAAGGCCCTGACTGATGTATTCGTAAGAGCTAAGG
. : . : . : . : . : . :
JMFS101H02+ ACAGCATGGTGAGTGCCAGTACCCATAGGAGCCTGGAAGAGAGTGTCAACCAATCCCTTT
JMFF035G15+ ACAGCATGGTGAGTGCCAGTACCCATAGGAGCCTGGAAGAGAGTGTCAACCAATCCCTTT
JMSF039B03+ ACAGCATGGTGAGTGCCAGTACCCATAGGAGCCTGGAAGAGAGTGTCAACCAATCCCTTT
____________________________________________________________
consensus ACAGCATGGTGAGTGCCAGTACCCATAGGAGCCTGGAAGAGAGTGTCAACCAATCCCTTT
. : . : . : . : . : . :
JMFS101H02+ CCCCTCGTGATATCCTGCTGGTCATCAGAGATGTCCTCTACAAGCCCCTTCCACCTGTCC
JMFF035G15+ CCCCTCGTGATATCCTGCTGGTCATCAGAGATGTCCTCTACAAGCCCCTTCCACCTGTCC
JMSF010E22+ TCCACCTGTCC
JMSF039B03+ CCCCTCGTGATATCCTGCTGGTCATCAGAGATGTCCTCTACAAGCCCCTTCCACCTGTCC
____________________________________________________________
consensus CCCCTCGTGATATCCTGCTGGTCATCAGAGATGTCCTCTACAAGCCCCTTCCACCTGTCC
. : . : . : . : . : . :
JMFS101H02+ TGATCGGTCTGTTTCTTCTCATCAATCTCGGGCTCAGCTGCATCGGGCGCCTCAGCTGCA
JMFF035G15+ TGATCGGTCTGTTTCTTCTCATCAATCTCGGGCTCAGCTGCATCGGGCGCCTCAGCTGCA
JMSF010E22+ TGATCGGTCTGTTTCTTCTCATCAATCTCGGGCTCAGCTGCATCGGGCGCCTCAGCTGCA
JMSF039B03+ TGATCGGTCTGTTTCTTCTCATCAATCTCGGGCTCAGCTGCATCGGGCGCCTCAGCTGCA
JMSF006G23+ TCAGCTGCA
____________________________________________________________
consensus TGATCGGTCTGTTTCTTCTCATCAATCTCGGGCTCAGCTGCATCGGGCGCCTCAGCTGCA
. : . : . : . : . : . :
JMFS101H02+ ACCCTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
JMFF035G15+ ACCCTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
JMSF010E22+ ACCCTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
JMSF039B03+ ACCCTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
JMSF006G23+ ACCNTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
____________________________________________________________
consensus ACCCTCATTCGCCTGCTGCTTGAGATCTTGGGCATCGCAACTCTGTGCCCACCGCTTTTC
. : . : . : . : . : . :
JMFS101H02+ GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
JMFF035G15+ GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
JMSF010E22+ GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
JMSF039B03+ GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
JMSF006G23+ GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
____________________________________________________________
consensus GTTAAGCCCTTCCCGAAGAAACCACTGCTGGGAACTGAACTCCCTGCACTCCCATTGTTC
. : . : . : . : . : . :
JMFS101H02+ AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
JMFF035G15+ AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
JMSF010E22+ AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
JMSF039B03+ AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
JMSF006G23+ AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
____________________________________________________________
consensus AAACTCAACAGTGACTTGTTGACAGCTCCAATGGTGGAGACAGTGGCAGCCATTATCCTG
. : . : . : . : . : . :
JMFS101H02+ AAGCTGCTATGATCACTTGAAGACTGACTGA
JMFF035G15+ AAGCTGCTATGATCACTTGAAGACTGACTGAGATAACTCACAACTTGGAATTGGCTTT
JMSF010E22+ AAGCTGCTATGATCACTTGAAGACTGACTGAGATAACTCACAACTTGGAATTGGCTTT
JMSF039B03+ AAGCTGCTATGATCACTTGAAGACTGACTGAGATAACTCACAACTTGGAATTGGCTTT
JMSF006G23+ AAGCTGCTATGATCACTTGAAGACTGACTGAGATAACTCACAACTTGGAATTGGCTTTTC
____________________________________________________________
consensus AAGCTGCTATGATCACTTGAAGACTGACTGAGATAACTCACAACTTGGAATTGGCTTTTC