Contig 002080:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005D04Sequence334002080 (2)ref|XP_004249852.1|9e-18PREDICTED: bromodomain adjacent to zinc finger domain protein 2B-like [Solanum
JMSF017I03Sequence235002080 (2)ref|XP_004249852.1|2e-16PREDICTED: bromodomain adjacent to zinc finger domain protein 2B-like [Solanum 738018180ref|XP_009616473.1|1e-12PREDICTED: ubinuclein-1-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF005D04+                                     CCAGGGGGAGCATCCTTAGCTTCCTTTTCAACAG
                      ____________________________________________________________
consensus                                       CCAGGGGGAGCATCCTTAGCTTCCTTTTCAACAG
 
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JMSF005D04+           GTTGTTCTGGAGAGAAGCCAGGGCCTGGGGAATCATTATGTGGCGGAAGAATAAGTGGTT
                      ____________________________________________________________
consensus             GTTGTTCTGGAGAGAAGCCAGGGCCTGGGGAATCATTATGTGGCGGAAGAATAAGTGGTT
 
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JMSF017I03+                TCAGCTGCAGCTGCTGAGGCTCTTGGGGCAGGGCCAGGAGCCCCATTACCGTTGG
JMSF005D04+           GAAGCTCAGCTGCAGCTGCTGAGGCTCTTGGGGCAGGGCCAGGAGCCCCATTACCGTTGG
                      ____________________________________________________________
consensus             GAAGCTCAGCTGCAGCTGCTGAGGCTCTTGGGGCAGGGCCAGGAGCCCCATTACCGTTGG
 
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JMSF017I03+           ACTGAAGACCAGTTGCCTCCTTTAGAAGCTTCTTCCACGATACGATTGTTGTCTCTCCCG
JMSF005D04+           ACTGAAGACCAGTTGCCTCCTTTAGAAGCTTCTTCCACGATACGATTGTTGTCTCTCCCG
                      ____________________________________________________________
consensus             ACTGAAGACCAGTTGCCTCCTTTAGAAGCTTCTTCCACGATACGATTGTTGTCTCTCCCG
 
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JMSF017I03+           GTCTTAACTCAACCGTGAACCTCTGCCGCCCTCCCGCCGCCTCGTACGACGTCGACACCC
JMSF005D04+           GTCTTAACTCAACCGTGAACCTCTGCCGCCCTCCCGCCGCCTCGTACGACGTCGACACCC
                      ____________________________________________________________
consensus             GTCTTAACTCAACCGTGAACCTCTGCCGCCCTCCCGCCGCCTCGTACGACGTCGACACCC
 
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JMSF017I03+           TCCCGACACCAGGTTCACCGCCGCTGCTGCCTTCATCTATCGGAGGCTTCATTGATGCTC
JMSF005D04+           TCCCGACACCAGGTTCACCGCCGCTGCTGCCTTCATCTATCGGAGGCTTCATTGATGCTC
                      ____________________________________________________________
consensus             TCCCGACACCAGGTTCACCGCCGCTGCTGCCTTCATCTATCGGAGGCTTCATTGATGCTC