Contig 002067:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004D18Sequence365002067 (3)ref|XP_004245078.1|1e-10PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Solan446006538 (7)ref|XP_003552490.1|7e-51PREDICTED: ras-related protein RABD2a [Glycine max]
JMSF013D17Sequence448002067 (3)ref|XP_004245078.1|1e-24PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Solan784002067 (3)ref|XP_009757154.1|5e-106PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Nicot

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-                                                            AACAATTCAG
                      ____________________________________________________________
consensus                                                               AACAATTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CTGTAGTGTTATTTGAAAAATTCTTTGCATTGCAAGCAAGTATCAAAGTTTCTAACAGCT
                      ____________________________________________________________
consensus             CTGTAGTGTTATTTGAAAAATTCTTTGCATTGCAAGCAAGTATCAAAGTTTCTAACAGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          AAAAGGACTATAAGAGTTCACTGATTGACCACTGCATCAATCACAGAAGGTGGGGCAAAA
                      ____________________________________________________________
consensus             AAAAGGACTATAAGAGTTCACTGATTGACCACTGCATCAATCACAGAAGGTGGGGCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CAGCAATGCCATTATATATATTGTGGTCCAACCTGAAAAGATTCTCATCCATCACTTAAC
                      ____________________________________________________________
consensus             CAGCAATGCCATTATATATATTGTGGTCCAACCTGAAAAGATTCTCATCCATCACTTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          AAGACGAAACAGGATTCTACTTGTAGGCCTAACCTGTGTACGAATTTCACTATGGGCTTT
                      ____________________________________________________________
consensus             AAGACGAAACAGGATTCTACTTGTAGGCCTAACCTGTGTACGAATTTCACTATGGGCTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          GTTCCCGCGAATAATTAGTTAGTTGCTCCATCTGCCAGCTTTCTTGAGGCGCGACATGGT
                      ____________________________________________________________
consensus             GTTCCCGCGAATAATTAGTTAGTTGCTCCATCTGCCAGCTTTCTTGAGGCGCGACATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CATGTGAGGGAGTGTATTGCTCCATCTTGCTTAAGAGCTCTCGGGCAGTGGGAGCAGAGA
                      ____________________________________________________________
consensus             CATGTGAGGGAGTGTATTGCTCCATCTTGCTTAAGAGCTCTCGGGCAGTGGGAGCAGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CCACAATGTGCCGAGCACCTGGCTTTATGAAACCTTCCTCCACGCCATTGTCAAATAATG
                      ____________________________________________________________
consensus             CCACAATGTGCCGAGCACCTGGCTTTATGAAACCTTCCTCCACGCCATTGTCAAATAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          TCAGCAAAGAATTGTAGTACCCGTCAACATTGAGCAAGCCAACCGGTTTCTTGTGAATTC
                      ____________________________________________________________
consensus             TCAGCAAAGAATTGTAGTACCCGTCAACATTGAGCAAGCCAACCGGTTTCTTGTGAATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CAAGTTGTGCCCATGTTATCATTTCAAGTAACTCTTCCATGGTACCATATCCACCAGGAA
                      ____________________________________________________________
consensus             CAAGTTGTGCCCATGTTATCATTTCAAGTAACTCTTCCATGGTACCATATCCACCAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          GTGCAATAAAAGCATCAGCCTGTCGAGCCATTTCAGCCTTACGCTCGTGCATGTCAGGAA
                      ____________________________________________________________
consensus             GTGCAATAAAAGCATCAGCCTGTCGAGCCATTTCAGCCTTACGCTCGTGCATGTCAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CAATTTTAACATCGCCAACGCTTTCTCCAGATATCTCAATCGGCACAAGTGCTTTTGGAA
                      ____________________________________________________________
consensus             CAATTTTAACATCGCCAACGCTTTCTCCAGATATCTCAATCGGCACAAGTGCTTTTGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          TCACCCCAAAAACATGGCAGCCTCCATCATAGACTCTCTGGGCTATCAA-CCCCATCAAA
JMSF013D17+                  AAAAACATGGCAGCCTCCATCATAGACTCTCTGGGCTATCAACCCCCATCAAA
                      ____________________________________________________________
consensus             TCACCCCAAAAACATGGCAGCCTCCATCATAGACTCTCTGGGCTATCAACCCCCATCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF013D17-          CCAACACTTCCACCTCCATAGA-CAAGTCCATCTTCCTCACTACCAGTTCATTCCC    
JMSF013D17+           CCAACACTTCCACCTCCATAGACCAAGTCCATCTTCCTCACTACCAGTTCATTCCCCAAC
JMSF004D18+                                                                  CCAAC
                      ____________________________________________________________
consensus             CCAACACTTCCACCTCCATAGACCAAGTCCATCTTCCTCACTACCAGTTCATTCCCCAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           TCAAGAGCAGCATCACTGAAGACTTTTCTGTAGCCTGGGTTGCTTCCACAGAAAACACAA
JMSF004D18+           TCAAGAGCAGCATCACTGAAGACTTTTCTGTAGCCTGGGTTGCTTCCACAGAAAACACAA
                      ____________________________________________________________
consensus             TCAAGAGCAGCATCACTGAAGACTTTTCTGTAGCCTGGGTTGCTTCCACAGAAAACACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           ATTTTCTTGAATTTGCTGCTGCTATTGGTTTCCATTCATAGAAGTTGCAAACCCCTACCA
JMSF004D18+           ATTTTCTTGAATTTGCTGCTGCTATTGGTTTCCATTCATAGAAGTTGCAAACCCCTACCA
                      ____________________________________________________________
consensus             ATTTTCTTGAATTTGCTGCTGCTATTGGTTTCCATTCATAGAAGTTGCAAACCCCTACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           ATTCAAATGTCCCAATATAAGTGCTAAAACGATCAAGAACCTCAACTTTATCTTAAACCC
JMSF004D18+           ATTCAAATGTCCCAATATAAGTGCTAAAACGATCAAGAACCTCAACTTTATCTTAAACCC
                      ____________________________________________________________
consensus             ATTCAAATGTCCCAATATAAGTGCTAAAACGATCAAGAACCTCAACTTTATCTTAAACCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           ACTTCTTAATGTGTGTAAAGAGAGAAAATTTATTGAAAAAGGAGTCAAACAAGACAGGAA
JMSF004D18+           ACTTCTTAATGTGTGTAAAGAGAGAAAATTTATTGAAAAAGGAGTCAAACAAGACAGGAA
                      ____________________________________________________________
consensus             ACTTCTTAATGTGTGTAAAGAGAGAAAATTTATTGAAAAAGGAGTCAAACAAGACAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           TCTGGGTATCGCCTGAAGTGATGAAGAAAACAGTCCAGGAAATGGATACTCCTTCCTATA
JMSF004D18+           TCTGGGTATCGCCTGAAGTGATGAAGAAAACAGTCCAGGAAATGGATACTCCTTCCTATA
                      ____________________________________________________________
consensus             TCTGGGTATCGCCTGAAGTGATGAAGAAAACAGTCCAGGAAATGGATACTCCTTCCTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013D17+           TATGAATAGAATAGAATAGAATCGAATATATGAT                          
JMSF004D18+           TATGAATAGAATAGAATAGAATCGAATATATGATGATTGACAAAAGAGATTAAACCTACC
                      ____________________________________________________________
consensus             TATGAATAGAATAGAATAGAATCGAATATATGATGATTGACAAAAGAGATTAAACCTACC