Contig 002065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004B05Sequence295002065 (3)ref|XP_009765930.1|70.1PREDICTED: uncharacterized protein LOC104217391 [Nicotiana sylvestris]327002573 (3)ref|XP_010102859.1|7e-26Zinc finger protein [Morus notabilis] ref|XP_010111936.1| Zinc finger protein [M
JMSF022B05Sequence679002065 (3)ref|XP_009765930.1|118PREDICTED: uncharacterized protein LOC104217391 [Nicotiana sylvestris]764002065 (3)ref|XP_009345369.1|130PREDICTED: uncharacterized protein LOC103937177 [Pyrus x bretschneideri]

Alignment

This contig is upended


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rJMSF022B05-                                                        GAACTTTAATGTTA
                      ____________________________________________________________
consensus                                                           GAACTTTAATGTTA
 
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rJMSF022B05-          TTGTATGTTTACAGATCTTCCTCCTGTTTATGAAAAATAAAATTGTGCCTAGAGTCAGTA
                      ____________________________________________________________
consensus             TTGTATGTTTACAGATCTTCCTCCTGTTTATGAAAAATAAAATTGTGCCTAGAGTCAGTA
 
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rJMSF022B05-          ACGAAAAGGAAAACCACACACGCTGGTGATCCGAGTGTCTAGAGACAAAGCCTTCTCCTA
                      ____________________________________________________________
consensus             ACGAAAAGGAAAACCACACACGCTGGTGATCCGAGTGTCTAGAGACAAAGCCTTCTCCTA
 
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rJMSF022B05-          CATGCCTCGAAGGGGAGTGAAACCGTGCAAGGAGAGGAGGAGCCCAAGTCTTTAACGAGC
                      ____________________________________________________________
consensus             CATGCCTCGAAGGGGAGTGAAACCGTGCAAGGAGAGGAGGAGCCCAAGTCTTTAACGAGC
 
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rJMSF022B05-          TCTTGAATCAAGTCTGCACAGATGTAATCTTGTAAAACCAGTCCGATTTTTCCAGCCTCT
                      ____________________________________________________________
consensus             TCTTGAATCAAGTCTGCACAGATGTAATCTTGTAAAACCAGTCCGATTTTTCCAGCCTCT
 
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rJMSF022B05-          CTGTGCTCGCCGCAAGCTATGTCTCTGCACACTTCCTCCACGCTCTGAACCATCGCTTTG
                      ____________________________________________________________
consensus             CTGTGCTCGCCGCAAGCTATGTCTCTGCACACTTCCTCCACGCTCTGAACCATCGCTTTG
 
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rJMSF022B05-          CTGCACCACATTACAGGAGAGGCGGCAACTGCCCCTCGCTTTGTTCGGAAAGAACTCGTG
                      ____________________________________________________________
consensus             CTGCACCACATTACAGGAGAGGCGGCAACTGCCCCTCGCTTTGTTCGGAAAGAACTCGTG
 
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rJMSF022B05-          GTGAACTTGTTCAGAATACAGTTGGTATTACTGCCATCTGTCCCCCCTGCCTTCTTGCTC
                      ____________________________________________________________
consensus             GTGAACTTGTTCAGAATACAGTTGGTATTACTGCCATCTGTCCCCCCTGCCTTCTTGCTC
 
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rJMSF022B05-          CTTTGCACAATGTGGAGTGCAATATTGTCGTGAATTTTGCTCAAAGGTGGCGAACGACTT
JMSF022B05+              TGCACAATGTGGAGTGCAATATTGTCGTGAA-TTTGCTCAAAGGTGGCGAACGACTT
                      ____________________________________________________________
consensus             CTTTGCACAATGTGGAGTGCAATATTGTCGTGAATTTTGCTCAAAGGTGGCGAACGACTT
 
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rJMSF022B05-          ATCATCTGCTCGTCTAACACGCTGATCGGACTCAGAAGCTGATGCTCCGCCGTAGATTTG
JMSF022B05+           ATCATCTGCTCGTNTAACACGNTGATCGGACTCAGAAGCTGATGCTCCGCCGTAGATTTG
                      ____________________________________________________________
consensus             ATCATCTGCTCGTCTAACACGCTGATCGGACTCAGAAGCTGATGCTCCGCCGTAGATTTG
 
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rJMSF022B05-          TTTTTGCATGTTTCCACAGCCGCCGCCGCCGGCGGAGTGGATGCGCCGCTCGCCGATGAC
JMSF022B05+           TTTTTGCATGTTTCCACAGCCGCCGCCGCCGGCGGAGTGGATGCGCCGCTCGCCGATGAC
                      ____________________________________________________________
consensus             TTTTTGCATGTTTCCACAGCCGCCGCCGCCGGCGGAGTGGATGCGCCGCTCGCCGATGAC
 
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rJMSF022B05-          GACGACGACCCCACGGCCTTTATAATTTTCTTAAGCGCTTCCAAGTCTTGGTTGCACTTG
JMSF022B05+           GACGACGACCCCACGGCCTTTATAATTTTCTTAAGCGCTTCCAAGTCTTGGTTGCACTTG
                      ____________________________________________________________
consensus             GACGACGACCCCACGGCCTTTATAATTTTCTTAAGCGCTTCCAAGTCTTGGTTGCACTTG
 
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rJMSF022B05-          TCTAACGCCTTCAANAGCATCTTCCTCTTCACTTCCGTCAACGATGGGTTCTCCTTCCGC
JMSF022B05+           TCTAACGCCTTCAACAGCATCTTCCTCTTCACTTCCGTCAACGAT-GGTTCTCCTTCCGC
                      ____________________________________________________________
consensus             TCTAACGCCTTCAACAGCATCTTCCTCTTCACTTCCGTCAACGATGGGTTCTCCTTCCGC
 
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rJMSF022B05-          CGCAACCACCGGCGAGCACTTCTCCTCCAA                              
JMSF022B05+           CGCAACCACCGGCGAGCACTTCTCCTCCAACCCCATCAGCCGCACCACCAATGCGGAGGG
                      ____________________________________________________________
consensus             CGCAACCACCGGCGAGCACTTCTCCTCCAACCCCATCAGCCGCACCACCAATGCGGAGGG
 
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JMSF022B05+           TCGAGTTTTTACTCCATTTTCAGCGGAGGCTCGACGGCGGAGCTCCGGTGGCAGAGCGGG
                      ____________________________________________________________
consensus             TCGAGTTTTTACTCCATTTTCAGCGGAGGCTCGACGGCGGAGCTCCGGTGGCAGAGCGGG
 
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JMSF022B05+           ACTTCTCTGTACAATTACTTCAGCGTTATTATTCTGATCATCCACCGTCACTTTGTTGTT
JMSF004B05+                TCTGTACAATTACTTCAGCGTTATTATTCTGATCATCCACCGTCACTTTGTTGTT
                      ____________________________________________________________
consensus             ACTTCTCTGTACAATTACTTCAGCGTTATTATTCTGATCATCCACCGTCACTTTGTTGTT
 
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JMSF022B05+           CGCCGGAGATGAATCTTCGCTGAATTTTCCTCGCTTTCCACCAGACGTAAGGCGTTTGGT
JMSF004B05+           CGCCGGAGATGAATCTTCGCTGAATTTTCCTCGCTTTCCACCAGACGTAAGGCGTTTGGT
                      ____________________________________________________________
consensus             CGCCGGAGATGAATCTTCGCTGAATTTTCCTCGCTTTCCACCAGACGTAAGGCGTTTGGT
 
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JMSF022B05+           TCTGCTTTGGTATTTGGAGATGAGGTGAAAGATTCCGGACATGCAACCGACGGATTTCTC
JMSF004B05+           TCTGCTTTGGTATTTGGAGATGAGGTGAAAGATTCCGGACATGCAACCGACGGATTTCTC
                      ____________________________________________________________
consensus             TCTGCTTTGGTATTTGGAGATGAGGTGAAAGATTCCGGACATGCAACCGACGGATTTCTC
 
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JMSF022B05+           TCGACGGCGATTTTCCGGCGGCGGTGTCTGCCGGCGGGAGGAGGAGAGTAGAGAATCTTG
JMSF004B05+           TCGACGGCGATTTTCCGGCGGCGGTGTCTGCCGGCGGGAGGAGGAGAGTAGAGAATCTTG
                      ____________________________________________________________
consensus             TCGACGGCGATTTTCCGGCGGCGGTGTCTGCCGGCGGGAGGAGGAGAGTAGAGAATCTTG
 
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JMSF022B05+           TCGGTTCAGCATTTTGGTTGGG                                      
JMSF004B05+           TCGGTTCAGCATTTTGGTTGGGTGAAGCGAGTAGCGGACACTGGGAGAGAATAAAAGGCC
                      ____________________________________________________________
consensus             TCGGTTCAGCATTTTGGTTGGGTGAAGCGAGTAGCGGACACTGGGAGAGAATAAAAGGCC