Contig 002062:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003P05Sequence296002062 (2)ref|XP_009369320.1|6e-09PREDICTED: RAD50-interacting protein 1 [Pyrus x bretschneideri]184009887 (2)
JMSF038B18Sequence669002062 (2)gb|KDP31230.1|4e-73hypothetical protein JCGZ_11606 [Jatropha curcas]211009887 (2)

Alignment

This contig is upended


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JMSF038B18+                                                         CCAACTCATCTACA
                      ____________________________________________________________
consensus                                                           CCAACTCATCTACA
 
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JMSF038B18+           TGGTCTAGTCCCATCTCCAAAAAGAACACATCCTCACACCATTCCTTTAGAACTGTTGCA
                      ____________________________________________________________
consensus             TGGTCTAGTCCCATCTCCAAAAAGAACACATCCTCACACCATTCCTTTAGAACTGTTGCA
 
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JMSF038B18+           AAATAGCGAGACGCGTTGATGCACCTAACTACTTTTGTCAAAGCATCATCATCTGTTAGT
                      ____________________________________________________________
consensus             AAATAGCGAGACGCGTTGATGCACCTAACTACTTTTGTCAAAGCATCATCATCTGTTAGT
 
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JMSF038B18+           GCTGTTAGACCTTCAGCGTCTTGGGACCTGAGAAGTATGCAATCAAAAAATTTCTTTACT
                      ____________________________________________________________
consensus             GCTGTTAGACCTTCAGCGTCTTGGGACCTGAGAAGTATGCAATCAAAAAATTTCTTTACT
 
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JMSF038B18+           AGTGGTGCTCCTATCAATCTCAAAAACTTTGATCTCAATGAAACAGTTGGCAGTGATCGA
                      ____________________________________________________________
consensus             AGTGGTGCTCCTATCAATCTCAAAAACTTTGATCTCAATGAAACAGTTGGCAGTGATCGA
 
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JMSF038B18+           CAACGATCAATGACTGCAGATAAACGCCGAAGAAAGGCACTGGCAATTGCAGGAGACTTG
                      ____________________________________________________________
consensus             CAACGATCAATGACTGCAGATAAACGCCGAAGAAAGGCACTGGCAATTGCAGGAGACTTG
 
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JMSF038B18+           GTGTCCCCTTGCCCTGATTGAAGGGCAGATCCTTGAACATCACTCGACCAATTTCTTTCA
                      ____________________________________________________________
consensus             GTGTCCCCTTGCCCTGATTGAAGGGCAGATCCTTGAACATCACTCGACCAATTTCTTTCA
 
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JMSF038B18+           TCCACTATATCAGGTTTCAATTTATCAAGTGCATCATCAAGTTCAATTTCAGCCCATAAG
                      ____________________________________________________________
consensus             TCCACTATATCAGGTTTCAATTTATCAAGTGCATCATCAAGTTCAATTTCAGCCCATAAG
 
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JMSF038B18+           TCAAGCCAATCAGGTCTGTCACCAAATACAGAAAGTGAAGAAATCTTCCGAAGTCCATCT
                      ____________________________________________________________
consensus             TCAAGCCAATCAGGTCTGTCACCAAATACAGAAAGTGAAGAAATCTTCCGAAGTCCATCT
 
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JMSF038B18+           TCATGCAATGAAAGTGAGATTCCTGATTGTGAATCACTGAATCCATGAGTGAAAGAGTCT
JMSF003P05+                                      TGTGAATCACTGAATCCATGAGTGAAAGAGTCT
                      ____________________________________________________________
consensus             TCATGCAATGAAAGTGAGATTCCTGATTGTGAATCACTGAATCCATGAGTGAAAGAGTCT
 
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JMSF038B18+           GGTCATCTGGTTTATAGTGATTTGGTTTATGGGTTTAGGGTTTGGGAACTGTAGGGGAAA
JMSF003P05+           GGTCATCTGGTTTATAGTGATTTGGTTTATGGGTTTAGGGTTTGGGAACTGTAGGGGAAA
                      ____________________________________________________________
consensus             GGTCATCTGGTTTATAGTGATTTGGTTTATGGGTTTAGGGTTTGGGAACTGTAGGGGAAA
 
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JMSF038B18+           AGGGAATCGAAAGCTATGGCAGAGACGAGCTTCAATCTGGTTCGTTACAACAAT      
JMSF003P05+           AGGGAATCGAAAGCTATGGCAGAGACGAGCTTCAATCTGGTTCGTTACAACAATAGCACC
                      ____________________________________________________________
consensus             AGGGAATCGAAAGCTATGGCAGAGACGAGCTTCAATCTGGTTCGTTACAACAATAGCACC