Contig 002055:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003A13Sequence239002055 (4)dbj|BAA11310.1|2e-14chlorophyl a/b binding protein [Ipomoea nil]758009894 (15)ref|XP_008456347.1|3e-169PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Cucumis melo]
JMSF003O11Sequence180002055 (4)739009894 (15)ref|XP_004145734.1|4e-167PREDICTED: chlorophyll a-b binding protein, chloroplastic-like [Cucumis sativus
JMSF006P01Sequence307002055 (4)ref|XP_011096521.1|1e-29PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Sesamum indi426009894 (15)ref|WP_039311891.1|1e-48hypothetical protein, partial [Paenibacillus sp. IHB B 3415] gb|KHL91104.1| hypo
JMSF025F13Sequence679002055 (4)ref|XP_011096521.1|1e-125PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like [Sesamum indi760009894 (15)gb|AFW81158.1|1e-137light harvesting chlorophyll a/b binding protein3 [Zea mays]

Alignment

This contig is upended


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JMSF025F13+                                               GTCGAAGCTGCCACCGGGGTAGAG
                      ____________________________________________________________
consensus                                                 GTCGAAGCTGCCACCGGGGTAGAG
 
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JMSF025F13+           TGGGTCGGTGATCTCTCCGAGGGGTCCGCCGGCAATACGGTAACCCTCAACGGCTCCCAT
                      ____________________________________________________________
consensus             TGGGTCGGTGATCTCTCCGAGGGGTCCGCCGGCAATACGGTAACCCTCAACGGCTCCCAT
 
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JMSF025F13+           CAACACAACTTGGCATGCCCAGATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTT
                      ____________________________________________________________
consensus             CAACACAACTTGGCATGCCCAGATGGCCAAGATGCTCTGTGCGTGGATCAAGCTTGGGTT
 
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JMSF025F13+           GCCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGC
                      ____________________________________________________________
consensus             GCCCAAGTAGTCAAGACCTCCCTCGCTGAAGATCTGAGCTCCGGCCTTGAACCACACTGC
 
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JMSF025F13+           CTCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCC
                      ____________________________________________________________
consensus             CTCGCCGAACTTCACGCCGTTGCGGGACAACAGCTCCGGGAAAACGCATCCAAGGGCTCC
 
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JMSF025F13+           CAGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGG
                      ____________________________________________________________
consensus             CAGCATCGCCCATCTGGAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCTGG
 
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JMSF025F13+           GTCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTA
JMSF006P01+                                                           TCCGGTCAGGTA
                      ____________________________________________________________
consensus             GTCAGCAGAGAGGCCAGCAGTGTCCCATCCGTAGTCGCCGGGGAACTCTCCGGTCAGGTA
 
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JMSF025F13+           GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
JMSF006P01+           GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
                      ____________________________________________________________
consensus             GCTTGGGGGCTCGCCGGAGAATGGACCCAAGTACTTAACACGGTCTGGGCCGTACCATGG
 
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JMSF025F13+           GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
JMSF006P01+           GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
JMSF003A13+            CTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
                      ____________________________________________________________
consensus             GCTGCCGGATGAAACAGGCTTCGGCTTACCAGCGGTCTTCCTCATGGTAAACTTGGCGTT
 
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JMSF025F13+           TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF006P01+           TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF003O11+           TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
JMSF003A13+           TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
                      ____________________________________________________________
consensus             TCCGGTGATTTCCGGTGTGGAGGGCGAGAGCTTCACTGCCTTTCCGGCGAAACTAGGGGA
 
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JMSF025F13+           AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF006P01+           AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF003O11+           AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
JMSF003A13+           AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
                      ____________________________________________________________
consensus             AGAGAGAGCCATTGTAGCTGCTGCCATTGTACTTCTTTATAAGTGAAATGCAAAGACAAA
 
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JMSF025F13+           TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT      
JMSF006P01+           TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT      
JMSF003O11+           TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGT      
JMSF003A13+           TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGTGGCTTC
                      ____________________________________________________________
consensus             TGAAGCTAAAGAAGGTGGTAACTACAAGAAGTGTGAATAGCTCCTTTAATTTGTGGCTTC