Contig 002053:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002O18Sequence227002053 (3)762002796 (3)ref|XP_009775860.1|9e-78PREDICTED: uncharacterized protein At1g04910-like, partial [Nicotiana sylvestri
JMSF013C14Sequence392002053 (3)ref|XP_009757068.1|87.8PREDICTED: uncharacterized protein LOC104209984 [Nicotiana sylvestris]769002796 (3)
JMSF028G19Sequence642002053 (3)ref|XP_009757068.1|211PREDICTED: uncharacterized protein LOC104209984 [Nicotiana sylvestris]760002796 (3)ref|XP_009775860.1|2e-70PREDICTED: uncharacterized protein At1g04910-like, partial [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF028G19+                             GGGTGGAAATGAAATGGTCTTCATCATAAATATCAGCAAACT
                      ____________________________________________________________
consensus                               GGGTGGAAATGAAATGGTCTTCATCATAAATATCAGCAAACT
 
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JMSF028G19+           CACTAGAGTCCCTCCAAACATTGTTAAATTCAAGATGAGGGATGACCAGTGTTGCGTTCA
                      ____________________________________________________________
consensus             CACTAGAGTCCCTCCAAACATTGTTAAATTCAAGATGAGGGATGACCAGTGTTGCGTTCA
 
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JMSF028G19+           ATAACCCAGCAACTGCCACTGCATTGCAGATCGATGATCTTTGCTGATTAAGGCCACCAT
                      ____________________________________________________________
consensus             ATAACCCAGCAACTGCCACTGCATTGCAGATCGATGATCTTTGCTGATTAAGGCCACCAT
 
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JMSF028G19+           TAGCCTCAATAATTATGTAAAGATTGGATGACTCTAGACGCAGAGCAGCAGAAGTGTTTG
                      ____________________________________________________________
consensus             TAGCCTCAATAATTATGTAAAGATTGGATGACTCTAGACGCAGAGCAGCAGAAGTGTTTG
 
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JMSF013C14+                           TCTTAGCTTCCTTTTGTATATCCAGACATGTGACAACTCAACAG
JMSF028G19+           AGCAATGCCTTTGCTCTCTTAGCTTCCTTTTGTATATCCAGACATGTGACAACTCAACAG
                      ____________________________________________________________
consensus             AGCAATGCCTTTGCTCTCTTAGCTTCCTTTTGTATATCCAGACATGTGACAACTCAACAG
 
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JMSF013C14+           TAGAAGAATTGTCGGCATCAATGTCGGTCCATAGCCTCCGGAAGATCTCGTGGCTGCGGT
JMSF028G19+           TAGAAGAATTGTCGGCATCAATGTCGGTCCATAGCCTCCGGAAGATCTCGTGGCTGCGGT
                      ____________________________________________________________
consensus             TAGAAGAATTGTCGGCATCAATGTCGGTCCATAGCCTCCGGAAGATCTCGTGGCTGCGGT
 
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JMSF013C14+           AGACGGCGCCCTGCGGTGAACGACTGTGCAAGAGGGAGAACAGGGGGCGCAGGCAGCTGA
JMSF028G19+           AGACGGCGCCCTGCGGTGAACGACTGTGCAAGAGGGAGAACAGGGGGCGCAGGCAGCTGA
                      ____________________________________________________________
consensus             AGACGGCGCCCTGCGGTGAACGACTGTGCAAGAGGGAGAACAGGGGGCGCAGGCAGCTGA
 
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JMSF013C14+           TCAGGCCGGAGAAGTAGAGGAGTGGCAGGAGAAGCAGTGAGCACCGGAGAAGAATCCGGC
JMSF028G19+           TCAGGCCGGAGAAGTAGAGGAGTGGCAGGAGAAGCAGTGAGCACCGGAGAAGAATCCGGC
JMSF002O18+                        GTAGAGGAGTGGCAGGAGAAGCNGTGAGCACCGGAGAAGAATCCGNC
                      ____________________________________________________________
consensus             TCAGGCCGGAGAAGTAGAGGAGTGGCAGGAGAAGCAGTGAGCACCGGAGAAGAATCCGGC
 
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JMSF013C14+           GGTTGGAGAAGAGAAACCCGCCTCGCCTGCGGTAGTGGAGCTGTAGCTTCCGCCGAGAGT
JMSF028G19+           GGTTGGAGAAGAGAAACCCGCCTCGCCTGCGGTAGTGGAGCTGTAGCTTCCGCCGAGAGT
JMSF002O18+           GGTTGGAGAAGAGAAACCCGCCTCGCCTGCGGTAGTGGAGCTGTAGCTTCCGCCGAGAGT
                      ____________________________________________________________
consensus             GGTTGGAGAAGAGAAACCCGCCTCGCCTGCGGTAGTGGAGCTGTAGCTTCCGCCGAGAGT
 
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JMSF013C14+           GGCGGTGGGCCGGCGAAGGGGGCGGCGAGGTCGGAGTTTGAGCGTCGGTGGTAGCCCCGT
JMSF028G19+           GGCGGTGGGCCGGCGAAGGGGGCGGCGAGGTCGGAGTTTGAGCGTCGGTGGTAGCCCCGT
JMSF002O18+           GGCGGTGGGCCGGCGAAGGGGGCGGCGAGGTCGGAGTTTGAGCGTCGGTGGTAGCCCCGT
                      ____________________________________________________________
consensus             GGCGGTGGGCCGGCGAAGGGGGCGGCGAGGTCGGAGTTTGAGCGTCGGTGGTAGCCCCGT
 
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JMSF013C14+           AATCAACGGCGATTTTTGAGGCCATGCAATAGAGACTGTGCGCTGT              
JMSF028G19+           AATCAACGGCGATTTTTGAGGCCATGCAATAGAGACTGTGCGCTGTCAGAGAATAGAACC
JMSF002O18+           AATCAACGGCGATTTTTGAGGCCATGCAATAGAGACTGTNCGCTGTCANAGAATAGAACC
                      ____________________________________________________________
consensus             AATCAACGGCGATTTTTGAGGCCATGCAATAGAGACTGTGCGCTGTCAGAGAATAGAACC