Contig 002047:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001O14Sequence213002047 (4)586007248 (4)
JMSF008H17Sequence411002047 (4)ref|XP_009628293.1|1e-30PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif785007248 (4)ref|XP_009787152.1|3e-17PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris
JMSF032P09Sequence645002047 (4)ref|XP_009628293.1|7e-71PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif690007248 (4)ref|XP_009787152.1|2e-06PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris
JMSF050M04Sequence656002047 (4)ref|XP_009628293.1|5e-71PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana tomentosif705007248 (4)ref|XP_009787152.1|2e-06PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 [Nicotiana sylvestris

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+                 CCAAGTTCTTCTGATGTAAGATCACGAGCCTCATCTTCATTGGCTGTTATGACT
JMSF050M04+              TTCCCAAGTTCTTCTGATGTAAGATCACGAGCNTCATCTTCATTGGCTGTTATGACT
                      ____________________________________________________________
consensus                TTCCCAAGTTCTTCTGATGTAAGATCACGAGCCTCATCTTCATTGGCTGTTATGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           CTTGTTTTCACAGCAGCTTTTGGATGAACATCAATGCTATCAAGCCATGCATCCTTGATA
JMSF050M04+           CTTGTTTTCACAGCAGCTTTTGGATGAACATCAATGCTATCAAGCCATGCATCCTTGATA
                      ____________________________________________________________
consensus             CTTGTTTTCACAGCAGCTTTTGGATGAACATCAATGCTATCAAGCCATGCATCCTTGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TCATTTTCATTGACATACTCAACATAATTTCCATTGGCATCAAAATAACCTTCTTCCCTC
JMSF050M04+           TCATTTTCATTGACATACTCAACATAATTTCCATTGGCATCAAAATAACCTTCTTCCCTC
                      ____________________________________________________________
consensus             TCATTTTCATTGACATACTCAACATAATTTCCATTGGCATCAAAATAACCTTCTTCCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TCTTTGTTCAGATTGAAGGGTTCTATCTGAATCCCATCCTCAACAAATGTTTCATTATCC
JMSF050M04+           TCTTTGTTCAGATTGAAGGGTTCTATCTGAATCCCATCCTCAACAAATGTTTCATTATCC
                      ____________________________________________________________
consensus             TCTTTGTTCAGATTGAAGGGTTCTATCTGAATCCCATCCTCAACAAATGTTTCATTATCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TCATATGCCTCTTCGGCCAGTGCTATGTTGTGAACCATTCCTCTATTTCCTTCATCAAGG
JMSF008H17+           TCATATGCCTCTTCGGCCAGTGCTATGTTGTGAACCATTCCTCTATTTCCTTCATCAAGG
JMSF050M04+           TCATATGCCTCTTCGGCCAGTGCTATGTTGTGAACCATTCCTCTATTTCCTTCATCAAGG
                      ____________________________________________________________
consensus             TCATATGCCTCTTCGGCCAGTGCTATGTTGTGAACCATTCCTCTATTTCCTTCATCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           AGGTCAGCTGTGATTTGACTTCGGCGCATTGCCCGCTCTTTGGCTGCAAGACGAGGATTC
JMSF008H17+           AGGTCAGCTGTGATTTGACTTCGGCGCATTGCCCGCTCTTTGGCTGCAAGACGAGGATTC
JMSF050M04+           AGGTCAGCTGTGATTTGACTTCGGCGCATTGCCCGCTCTTTGGCTGCAAGACGAGGATTC
                      ____________________________________________________________
consensus             AGGTCAGCTGTGATTTGACTTCGGCGCATTGCCCGCTCTTTGGCTGCAAGACGAGGATTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TTCCATCCACTTGGTAATTCCTCACTTCCATCCACCACATAATCACCACGCTTTAACTTC
JMSF008H17+           TTCCATCCACTTGGTAATTCCTCACTTCCATCCACCACATAATCACCACGCTTTAACTTC
JMSF050M04+           TTCCATCCACTTGGTAATTCCTCACTTCCATCCACCACATAATCACCACGCTTTAACTTC
                      ____________________________________________________________
consensus             TTCCATCCACTTGGTAATTCCTCACTTCCATCCACCACATAATCACCACGCTTTAACTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TTACCTTTTGGGAACCTTACCCTCTTTTCCGCGGAGGGTTTTTGGGAGTCGTCGTCGACG
JMSF008H17+           TTACCTTTTGGGAACCTTACCCTCTTTTCCGCGGAGGGTTTTTGGGAGTCGTCGTCGACG
JMSF050M04+           TTACCTTTTGGGAACCTTACCCTCTTTTCCGCGGAGGGTTTTTGGGAGTCGTCGTCGACG
JMSF001O14+                                      TCCGCGGAGGGTTTTTGGGAGTCGTCGTCGACG
                      ____________________________________________________________
consensus             TTACCTTTTGGGAACCTTACCCTCTTTTCCGCGGAGGGTTTTTGGGAGTCGTCGTCGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           GAATCCACGAAAGGACGCTTGCGAGATCGCTGTGGTCCTCCTTCCTCCATGGCCTATCGT
JMSF008H17+           GAATCCACGAAAGGACGCTTGCGAGATCGCTGTGGTCCTCCTTCCTCCATGGCCTATCGT
JMSF050M04+           GAATCCACGAAAGGACGCTTGCGAGATCGCTGTGGTCCTCCTTCCTCCATGGCCTATCGT
JMSF001O14+           GAATCCACGAAAGGACGCTTGCGAGATCGCTGTGGTCCTCCTTCCTCCATGGCCTATCGT
                      ____________________________________________________________
consensus             GAATCCACGAAAGGACGCTTGCGAGATCGCTGTGGTCCTCCTTCCTCCATGGCCTATCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           CGGCGTAGCTCCGAGCAGTTGGTTCGGCAATAAACCGTGATTCTATACAGCTAAGGCGAT
JMSF008H17+           CGGCGTAGCTCCGAGCAGTTGGTTCGGCAATAAACCGTGATTCTATACAGCTAAGGCGAT
JMSF050M04+           CGGCGTAGCTCCGAGCAGTTGGTTCGGCAATAAACCGTGATTCTATACAGCTAAGGCGAT
JMSF001O14+           CGGCGTAGCTCCGAGCAGTTGGTTCGGCAATAAACCGTGATTCTATACAGCTAAGGCGAT
                      ____________________________________________________________
consensus             CGGCGTAGCTCCGAGCAGTTGGTTCGGCAATAAACCGTGATTCTATACAGCTAAGGCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF032P09+           TGCCGGTCACTGTTTTTCCTTTCCAAAAATGCAATTTCAAATATCAATTC          
JMSF008H17+           TGCCGGTCACTGTTTTTCCTTTCCAAAAATGCAATTTCAAATATCAATTC          
JMSF050M04+           TGCCGGTCACTGTTTTTCCTTTCCAAAAATGCAATTTCAAATATCAATTCGGGCTCAAC 
JMSF001O14+           TGCCGGTCACTGTTTTTCCTTTCCAAAAATGCAATTTCAAATATCAATTCGGGCTCAACC
                      ____________________________________________________________
consensus             TGCCGGTCACTGTTTTTCCTTTCCAAAAATGCAATTTCAAATATCAATTCGGGCTCAACC