Contig 002045:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN014H01Sequence563002045 (7)ref|XP_002320521.1|3e-31hypothetical protein POPTR_0014s16530g [Populus trichocarpa] gb|EEE98836.1| hypo
JMFN034K24Sequence507002045 (7)ref|XP_002320521.1|9e-29hypothetical protein POPTR_0014s16530g [Populus trichocarpa] gb|EEE98836.1| hypo
JMFS079B01Sequence554002045 (7)ref|XP_002320521.1|2e-31hypothetical protein POPTR_0014s16530g [Populus trichocarpa] gb|EEE98836.1| hypo
JMSF001M22Sequence279002045 (7)100022424
JMSF029I23Sequence435002045 (7)ref|XP_002320521.1|6e-32hypothetical protein POPTR_0014s16530g [Populus trichocarpa] gb|EEE98836.1| hypo
JMSF044H10Sequence429002045 (7)gb|KJB10756.1|8e-27hypothetical protein B456_001G221800 [Gossypium raimondii]385002045 (7)gb|KJB10756.1|5e-27hypothetical protein B456_001G221800 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF044H10+                                              TTTTTTTTTTGGAAAAAATTGATAA
                      ____________________________________________________________
consensus                                                TTTTTTTTTTGGAAAAAATTGATAA
 
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JMSF044H10+           AGGGCGAGTAAGAATAGATTTATATTGATATAAAGGGGACTTTTAGAAAATTAGAAATTG
rJMSF044H10-                             TTATATTGATATAAAGGGGACTTTTAGAAAATTAGAAATTG
JMFS079B01+                    AAGAATAGATTTATATTGATATAAAGGGGACTTTTAGAAAATTAGAAATTG
JMFN014H01+                    AAGAATAGATTTATATTGATATAAAGGGGACTTTTAGAAAATTAGAAATTG
JMFN034K24+                                                        GAAAATTAGAAATTG
                      ____________________________________________________________
consensus             AGGGCGAGTAAGAATAGATTTATATTGATATAAAGGGGACTTTTAGAAAATTAGAAATTG
 
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JMSF044H10+           CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
rJMSF044H10-          CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
JMFS079B01+           CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
JMFN014H01+           CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
JMFN034K24+           CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
                      ____________________________________________________________
consensus             CTACAAAGCAATTTCAATAACATTCTTTGATTTATTCGGTGAAGATCGTAAGTGCAAAGA
 
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JMSF044H10+           TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
rJMSF044H10-          TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
JMFS079B01+           TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
JMFN014H01+           TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
JMFN034K24+           TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
rJMSF029I23-              GAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
                      ____________________________________________________________
consensus             TAAAGAATTTGTCAATATTGGGAAGCATAAGGATTACGACCGCCGCCGCGGCGGCGCGTG
 
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JMSF044H10+           CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
rJMSF044H10-          CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
JMFS079B01+           CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
JMFN014H01+           CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
JMFN034K24+           CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
rJMSF029I23-          CCTTTCTCGTANCCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
                      ____________________________________________________________
consensus             CCTTTCTCGTAACCGTAGTATCACCTGACCGGAACCTTAATCCAGCCATTGGCAAAAGCA
 
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JMSF044H10+           ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
rJMSF044H10-          ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
JMFS079B01+           ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
JMFN014H01+           ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
JMFN034K24+           ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
rJMSF029I23-          ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
                      ____________________________________________________________
consensus             ATGGCCAAGATCACAAATGGTGTTGACATCCCAAATATGATTATATAGGGAAGCGGCGTC
 
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JMSF044H10+           TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
rJMSF044H10-          TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
JMFS079B01+           TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
JMFN014H01+           TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
JMFN034K24+           TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
rJMSF029I23-          TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
                      ____________________________________________________________
consensus             TTCATGGGATTCTCTCCTTCCCGTTCTCCTGCTGTTTGCCAATACTGCTCTGGCTCCTCT
 
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JMSF044H10+           TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACC                
rJMSF044H10-          TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACC                
JMFS079B01+           TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACCTCCAGCTTCTCCTCCT
JMFN014H01+           TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACCTCCAGCTTCTCCTCCT
JMFN034K24+           TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACCTCCAGCTTCTCCTCCT
rJMSF029I23-          TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACCTCCAGCTTCTCCTCCT
                      ____________________________________________________________
consensus             TCTTTGGTGATGAATTTCTTTTTACCTCCTTTCTTGACTTCACCTCCAGCTTCTCCTCCT
 
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JMFS079B01+           CC                                                          
JMFN014H01+           CC                                                          
JMFN034K24+           CCCCCAAGATTTGCAGAAACTCTGAAGTGGCTTGGCCTTCTTCTCGCTGAGCAAGGTGGA
rJMSF029I23-          CCCCCAAGATTTGCAGAAACTCTGAAGTGGCTTGGCCTTCTTCTCGCTGAGCAAGGTGGA
JMSF001M22+                                CTGAAGTGGCTTGGCCTTCTTCTCGCTGAGCAAGGTGGA
                      ____________________________________________________________
consensus             CCCCCAAGATTTGCAGAAACTCTGAAGTGGCTTGGCCTTCTTCTCGCTGAGCAAGGTGGA
 
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JMFN034K24+           TAAGAATGAGAGAAAAGCTTGGTTGGGAGAGACGGAGAGAAAAGCTTTG-TGAAAGAGTA
rJMSF029I23-          TAAGAATGAGAGAAAAGCTTGGTTGGGAGAGACGGAGAGAAAAGCTTTGTTGAAAGAGTA
JMSF001M22+           TAAGAATGAGAGAAAAGCTTGGTTTGGAGAGACGGAGAGAAAAGCTTTGTTGAAAGAGTA
                      ____________________________________________________________
consensus             TAAGAATGAGAGAAAAGCTTGGTTGGGAGAGACGGAGAGAAAAGCTTTGTTGAAAGAGTA
 
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JMFN034K24+           GAAGAAGAAACAA                                               
rJMSF029I23-          GAAGAAGAAACAA                                               
JMSF001M22+           GAAGAAGAAACAACAATCAGTTTGGCAGCCATTTCTCAGGATTAATTAGAAGATGGATAG
                      ____________________________________________________________
consensus             GAAGAAGAAACAACAATCAGTTTGGCAGCCATTTCTCAGGATTAATTAGAAGATGGATAG
 
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JMSF001M22+           ATGGTTAAGTTGTCAGTTTTGCAGAAGAATGGAAATGGGTTATCCTGTCTATGTGGTCAA
                      ____________________________________________________________
consensus             ATGGTTAAGTTGTCAGTTTTGCAGAAGAATGGAAATGGGTTATCCTGTCTATGTGGTCAA
 
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JMSF001M22+           AAATGTGCTCCAACTAATATCTCTTTTGTCTTTCTTCAAAGTCAGACTTAACAGAGCACC
                      ____________________________________________________________
consensus             AAATGTGCTCCAACTAATATCTCTTTTGTCTTTCTTCAAAGTCAGACTTAACAGAGCACC