Contig 002043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001K05Sequence365002043 (5)ref|XP_011079740.1|5e-44PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum]733007168 (5)gb|ADL70207.1|2e-75transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF001L05Sequence392002043 (5)ref|XP_011082496.1|1e-49PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP737007168 (5)gb|ADL70207.1|2e-75transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF031N17Sequence623002043 (5)gb|AFP19451.1|1e-91transport inhibitor response 1 [Camellia sinensis]734007168 (5)gb|ADL70207.1|2e-67transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF034F04Sequence707002043 (5)ref|XP_011082496.1|3e-112PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP725007168 (5)gb|ADL70207.1|5e-72transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i
JMSF044F03Sequence791002043 (5)ref|XP_011082496.1|5e-135PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] ref|XP675007168 (5)gb|ADL70207.1|8e-76transport inhibitor response 1 [Arabidopsis thaliana] gb|ADL70211.1| transport i

Alignment

This contig is upended


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JMSF044F03+            CAAGTGGCACAGCACGGTTGAGGCGAAGAGTCCTCAGATTAGGACACCGTGCAACCAGG
                      ____________________________________________________________
consensus              CAAGTGGCACAGCACGGTTGAGGCGAAGAGTCCTCAGATTAGGACACCGTGCAACCAGG
 
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JMSF044F03+           CGCTCAAGTGCCGAGAAACTCACCTCAGAGCCCAAGCAAGTAATGTCAAGTGACACTAGA
JMSF034F04+                                              GCAAGTAATGTCAAGTGACACTAGA
                      ____________________________________________________________
consensus             CGCTCAAGTGCCGAGAAACTCACCTCAGAGCCCAAGCAAGTAATGTCAAGTGACACTAGA
 
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JMSF044F03+           GATGTGCAGTTATCAGGGAAATGACTCAGCCAATGCCCACTCAGGTCCTCAACGTCACTC
JMSF034F04+           GATGTGCAGTTATCAGGGAAATGANTCAGCCAATGCCCACTCAGGTCCTCAACATCACTC
                      ____________________________________________________________
consensus             GATGTGCAGTTATCAGGGAAATGACTCAGCCAATGCCCACTCAGGTCCTCAACGTCACTC
 
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JMSF044F03+           TCCCTCAAGTTTAGCTCTTTCAAATTCCTGCAATTGGCGGCAATGGCAGCAAGGCCATCA
JMSF034F04+           TCCCTCAAGTTTAGCTCTTTCAAATTCCTGCAATTGGCGGCAATGGCAGCAAGGCCATCA
JMSF031N17+               TCAAGTTTAGCTCTTTCAAATTCCTGCAATTGGCGGCAATGGCAGCAAGGCCATCA
                      ____________________________________________________________
consensus             TCCCTCAAGTTTAGCTCTTTCAAATTCCTGCAATTGGCGGCAATGGCAGCAAGGCCATCA
 
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JMSF044F03+           GTAGTGAAGCCCTCACAAATGGAGAGCGAAAGGACCTTGAAGTTCTTAAAAGACCTAGAG
JMSF034F04+           GTAGTGAAGCCCTCACAAATGGAGAGCGAAAGGACCTTGAAGTTCTTAAAAGACCTAGAG
JMSF031N17+           GTAGTGAAGCCCTCACAAATGGAGAGCGAAAGGACCTTGAAGTTCTTAAAAGACCTAGAG
                      ____________________________________________________________
consensus             GTAGTGAAGCCCTCACAAATGGAGAGCGAAAGGACCTTGAAGTTCTTAAAAGACCTAGAG
 
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JMSF044F03+           ATCAACTCCAAGGTCTCGTCCGTGACCACCATTCTCTTTAGCCTAATCTCCTCAAGCCAA
JMSF034F04+           ATCAACTCCAAGGTCTCGTCCGTGACCACCATTCTCTTTAGCCTAATCTCCTCAAGCCAA
JMSF031N17+           ATCAACTCCAAGGTCTCGTCCGTGACCACCATTCTCTTTAGCCTAATCTCCTCAAGCCAA
                      ____________________________________________________________
consensus             ATCAACTCCAAGGTCTCGTCCGTGACCACCATTCTCTTTAGCCTAATCTCCTCAAGCCAA
 
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JMSF044F03+           GGGTAAACTCGCGCCATTGCCTCCACCCAGGGGTGGAAAAACCCTCCCCAACCCTCCGGC
JMSF034F04+           GGGTAAACTCGCGCCATTGCCTCCACCCAGGGGTGGAAAAACCCTCCCCAACCCTCCGGC
JMSF031N17+           GGGTAAACTCGCGCCATTGCCTCCACCCAGGGGTGGAAAAACCCTCCCCAACCCTCCGGC
JMSF001K05+                                                                  CCGGC
JMSF001L05+                                       AGGGGTGGAAAAACCCTCCCCAACCCTCCGGC
                      ____________________________________________________________
consensus             GGGTAAACTCGCGCCATTGCCTCCACCCAGGGGTGGAAAAACCCTCCCCAACCCTCCGGC
 
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JMSF044F03+           ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
JMSF034F04+           ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
JMSF031N17+           ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
JMSF001K05+           ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
JMSF001L05+           ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
                      ____________________________________________________________
consensus             ACCAGATTGAAGTCCGCGAAATGAGGCTTCCCCTTTAGCTCCACCGACCGGACCTCCGGG
 
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JMSF044F03+           AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
JMSF034F04+           AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
JMSF031N17+           AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
JMSF001K05+           AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
JMSF001L05+           AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
                      ____________________________________________________________
consensus             AAACGGCGGATCACGATCTCAGGGCTGACGGCGTAACAGTTCCCGACGAACACCCTCCTC
 
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JMSF044F03+           CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
JMSF034F04+           CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
JMSF031N17+           CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
JMSF001K05+           CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
JMSF001L05+           CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
                      ____________________________________________________________
consensus             CGGCACCACCTCTCGACGTCGTACCACGACTTGCACACCAAGGAGACCGCGTTCCGGTCC
 
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JMSF044F03+           CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTC                   
JMSF034F04+           CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTC                   
JMSF031N17+           CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTC                   
JMSF001K05+           CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTCGTCGAGAAAGGAGTAAGCC
JMSF001L05+           CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTCGTCGAGAAAGGAGTAAGCC
                      ____________________________________________________________
consensus             CTGTCGGAGGTGAGAAACGAGAAGACGTGTTCCAGCACTTCGTCGAGAAAGGAGTAAGCC
 
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JMSF001K05+           ATTGTCCTTGACAAAGCCCAAATCTGTAATCCACAGCTAGATTGGTCGACGCTGAAATGA
JMSF001L05+           ATTGTCCTTGACAAAGCCCAAATCTGTAATCCACAGCTAGATTGGTCGACGCTGAAATGA
                      ____________________________________________________________
consensus             ATTGTCCTTGACAAAGCCCAAATCTGTAATCCACAGCTAGATTGGTCGACGCTGAAATGA
 
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JMSF001K05+           GGTCAGTGTTTGGGGAGTTTCAGATCTGAAACACCATTAACTTCAAGCTTAGATTTGG  
JMSF001L05+           GGTCAGTGTTTGGGGAGTTTCAGATCTGAAACACCATTAACTTCAAGCTTAGATTTGGAC
                      ____________________________________________________________
consensus             GGTCAGTGTTTGGGGAGTTTCAGATCTGAAACACCATTAACTTCAAGCTTAGATTTGGAC