| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF039J12 | Sequence | 563 | 002042 (5) | ref|XP_010275209.1| | 2e-93 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nel | 752 | 010872 (5) | ref|XP_009609671.1| | 4e-98 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nic |
| JMFF041P20 | Sequence | 651 | 002042 (5) | ref|XP_009609671.1| | 6e-94 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Nic | 586 | 010872 (5) | ref|XP_002278066.2| | 1e-70 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD8 [Vit |
| JMSF001I11 | Sequence | 265 | 002042 (5) | ref|XP_004245896.1| | 1e-25 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Sol | |||||
| JMSF010I05 | Sequence | 305 | 002042 (5) | gb|AFK43954.1| | 4e-36 | unknown [Lotus japonicus] | 768 | 014968 | ref|XP_006352857.1| | 2e-69 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9-like |
| JMSF025J18 | Sequence | 667 | 002042 (5) | ref|XP_004244392.1| | 2e-96 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Sol | 709 | 010872 (5) | ref|XP_011082364.1| | 6e-89 | PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD9 [Ses |
This contig is upended
. : . : . : . : . : . :
JMSF025J18+ TCACAACTGCAGGCCTCTTAA
JMFF041P20+ TAA
____________________________________________________________
consensus TCACAACTGCAGGCCTCTTAA
. : . : . : . : . : . :
JMSF025J18+ AAGATGTGTGCACAACAGGACGAGAAGGTTTAGGTGAAGCAGAAACTTCACCAGTCTCAT
JMFF041P20+ AAGATGTGTGCACAACAGGACGAGAAGGTTTAGGTGAAGCAGAAACTTCACCAGTCTCAT
____________________________________________________________
consensus AAGATGTGTGCACAACAGGACGAGAAGGTTTAGGTGAAGCAGAAACTTCACCAGTCTCAT
. : . : . : . : . : . :
JMSF025J18+ CTTTAACTGAAGAACTTTCTTTTGGTGTTTCACTACTCTTAGAATCAGAACATTCATTAG
JMFF041P20+ CTTTAACTGAAGAACTTTCTTTTGGTGTTTCACTACTCTTAGAATCAGAACATTCATTAG
____________________________________________________________
consensus CTTTAACTGAAGAACTTTCTTTTGGTGTTTCACTACTCTTAGAATCAGAACATTCATTAG
. : . : . : . : . : . :
JMSF025J18+ TAGATGGTACATCCTTAGAGGCAACTGGTGACGATGGCAAACCTGCATCTTCTGCCATGC
JMFF041P20+ TAGATGGTACATCCTTAGAGGCAACTGGTGACGATGGCAAACCTGCATCTTCTGCCATGC
JMFF039J12+ CTGCATCTTCTGCCATGC
____________________________________________________________
consensus TAGATGGTACATCCTTAGAGGCAACTGGTGACGATGGCAAACCTGCATCTTCTGCCATGC
. : . : . : . : . : . :
JMSF025J18+ TTTTAGCAACTTCTTTGGAGAGTAACTGCCTGTACAAGTCAGCAGCTCTAGAGGTATACT
JMFF041P20+ TTTTAGCAACTTCTTTGGAGAGTAACTGCCTGTACAAGTCAGCAGCTCTAGAGGTATACT
JMFF039J12+ TTTTAGCAACTTCTTTGGAGAGTAACTGCCTGTACAAGTCAGCAGCTCTAGAGGTATACT
____________________________________________________________
consensus TTTTAGCAACTTCTTTGGAGAGTAACTGCCTGTACAAGTCAGCAGCTCTAGAGGTATACT
. : . : . : . : . : . :
JMSF025J18+ TGGCCTCAATCTTGCCTCCATCCGTCCATCCATGCTGCTTGAAAAAAACTTGAGCACGGT
JMFF041P20+ TGGCCTCAATCTTGCCTCCATCCGTCCATCCATGCTGCTTGAAAAAAACTTGAGCACGGT
JMFF039J12+ TGGCCTCAATCTTGCCTCCATCCGTCCATCCATGCTGCTTGAAAAAAACTTGAGCACGGT
____________________________________________________________
consensus TGGCCTCAATCTTGCCTCCATCCGTCCATCCATGCTGCTTGAAAAAAACTTGAGCACGGT
. : . : . : . : . : . :
JMSF025J18+ TGTTTCCACCAAAGTACATCATCTTTAATTGTTCTGGAGTCCATGAATCTAAATCCGTTG
JMFF041P20+ TGTTTCCACCAAAGTACATCATCTTTAATTGTTCTGGAGTCCATGAATCTAAATCCGTTG
JMFF039J12+ TGTTTCCACCAAAGTACATCATCTTTAATTGTTCTGGAGTCCATGAATCTAAATCCGTTG
JMSF010I05+ GTTG
____________________________________________________________
consensus TGTTTCCACCAAAGTACATCATCTTTAATTGTTCTGGAGTCCATGAATCTAAATCCGTTG
. : . : . : . : . : . :
JMSF025J18+ ACCTGACAAAGCTGACGTGAACACCGAGGTTCCGATGCACGGACGAACAGTCGATGCACA
JMFF041P20+ ACCTGACAAAGCTGACGTGAACACCGAGGTTCCGATGCACGGACGAACAGTCGATGCACA
JMFF039J12+ ACCTGACAAAGCTGACGTGAACACCGAGGTTCCGATGCACGGACGAACAGTCGATGCACA
JMSF010I05+ ACCTAACAAAGCTGACGTGAACGCCGAGGCTCCGATGTACGGCCGAGCAATCGATACACA
JMSF001I11+ CAATCGATACACA
____________________________________________________________
consensus ACCTGACAAAGCTGACGTGAACACCGAGGTTCCGATGCACGGACGAACAGTCGATGCACA
. : . : . : . : . : . :
JMSF025J18+ GGAAGATGCCATACGTCACCGACGCCCATGTCGAATTCTTCGCATTGCAATCAAAACACA
JMFF041P20+ GGAAGATGCCATACGTCACCGACGCCCATGTCGAATTCTTCGCATTGCAATCAAAACACA
JMFF039J12+ GGAAGATGCCATACGTCACCGACGCCCATGTCGAATTCTTCGCATTGCAATCAAAACACA
JMSF010I05+ GGAAGATCCCATAAGTCACAGACGCCCAGGTTGGGTTCTTCGCATTGCAATCAAAACACA
JMSF001I11+ GGAAGATCCCATAAGTCACAGACGCCCAGGTTGGGTTCTTCGCATTGCAATCAAAACACA
____________________________________________________________
consensus GGAAGATGCCATACGTCACCGACGCCCATGTCGAATTCTTCGCATTGCAATCAAAACACA
. : . : . : . : . : . :
JMSF025J18+ TCTTGTTTTCGGATTTTGCACGCAGCTTCCGAAATACAGCGTTTTTGTCGTTGAAATTAT
JMFF041P20+ TCTTGTTTTCGGATTTTGCACGCAGCTTCCGAAATACAGCGTTTTTGTCGTTGAAATTAT
JMFF039J12+ TCTTGTTTTCGGATTTTGCACGCAGCTTCCGAAATACAGCGTTTTTGTCGTTGAAATTAT
JMSF010I05+ TTTTGCTCTCGGTTTTCGCACGAAGCTTCCGGAAAACAGCATTCTTGTCGCTGAAATTCT
JMSF001I11+ TTTTGCTCTCGGTTTTCGCACGAAGCTTCCGGAAAACAGCATTCTTGTCGCTGAAATTCT
____________________________________________________________
consensus TCTTGTTTTCGGATTTTGCACGCAGCTTCCGAAATACAGCGTTTTTGTCGTTGAAATTAT
. : . : . : . : . : . :
JMSF025J18+ CGGAAGCCATG
JMFF041P20+ CGGAAGCCATG
JMFF039J12+ CGGAAGCCATG
JMSF010I05+ CGGAAGCCATGGACGCTGTGGGGGAGAGAGACAGGAGTTCCGAGAGGAGGTGTAAGGAAT
JMSF001I11+ CGGAAGCCATGGACGCTGTGGGGGAGAGAGACAGGAGTTCCGAGAGGAGGTGTAAGGAAT
____________________________________________________________
consensus CGGAAGCCATGGACGCTGTGGGGGAGAGAGACAGGAGTTCCGAGAGGAGGTGTAAGGAAT
. : . : . : . : . : . :
JMSF010I05+ AGAAATGGAGCTTTGCGTACAAGAGATAGAGATTGAGAAAGGCCTCCTCAGGGAACGC
JMSF001I11+ AGAAATGGAGCTTTGCGTACAAGAGATAGAGATTGAGAAAGGCCTCCTCAGGGAACGCTC
____________________________________________________________
consensus AGAAATGGAGCTTTGCGTACAAGAGATAGAGATTGAGAAAGGCCTCCTCAGGGAACGCTC