Contig 002039:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-                                             GTTAAAGTTGTATACAAACTATTCA
                      ____________________________________________________________
consensus                                                GTTAAAGTTGTATACAAACTATTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TAAATCATAATCCATAAACCACAATCATACTAATAAATAAGAAAGCTTCTGCAGTTCTCA
                      ____________________________________________________________
consensus             TAAATCATAATCCATAAACCACAATCATACTAATAAATAAGAAAGCTTCTGCAGTTCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TTTGCTCCAATGAGAATGGCAAGTGCGAATAACTCTCATTTAATGTGCATATGAATGTGG
                      ____________________________________________________________
consensus             TTTGCTCCAATGAGAATGGCAAGTGCGAATAACTCTCATTTAATGTGCATATGAATGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          ATTAAAGAAAAGAGTAGATGTGTATATAATTTGGTATAAGGGCTTTGAACTGTACCTGAT
                      ____________________________________________________________
consensus             ATTAAAGAAAAGAGTAGATGTGTATATAATTTGGTATAAGGGCTTTGAACTGTACCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          CAAAAGTAGAGTGACATAAATGAGAAGTCAGGCCACAAACTCACAATGGTAGTTCACCAC
                      ____________________________________________________________
consensus             CAAAAGTAGAGTGACATAAATGAGAAGTCAGGCCACAAACTCACAATGGTAGTTCACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TATTGGCAATAATAACTTTGCCTTTGGGTGTTCCGCTTGGCCTCCCTTCTCCCTCAATCT
                      ____________________________________________________________
consensus             TATTGGCAATAATAACTTTGCCTTTGGGTGTTCCGCTTGGCCTCCCTTCTCCCTCAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TGTAGACGACGTCCATCCCTGAGAGGACTTTGCCAAACACGACATGACGCCCATCCAACC
                      ____________________________________________________________
consensus             TGTAGACGACGTCCATCCCTGAGAGGACTTTGCCAAACACGACATGACGCCCATCCAACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          AGCTAGTTATCACTGTAGTGATAAAGAACTGTGATCCATTGGTATCTGGCCCAGCATTCG
                      ____________________________________________________________
consensus             AGCTAGTTATCACTGTAGTGATAAAGAACTGTGATCCATTGGTATCTGGCCCAGCATTCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          CCATTGATAGAAATCCAGGAGCAGTGTGCTTTAGTTTGAAGTTCTCATCTGCAAACTTGG
                      ____________________________________________________________
consensus             CCATTGATAGAAATCCAGGAGCAGTGTGCTTTAGTTTGAAGTTCTCATCTGCAAACTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TACCATATATTGATTCTCCACCTCGCCCATCACCAAGAGTGAAGTCACCTCCCTGGATCA
JMSF004I10+                                        TCACCAAGAGTGAAGTCACCTCCCTGGATCA
JMSF001G10+                            CCACCTCGCCCATCACCAAGAGTGAAGTCACCTCCCTGGATCA
                      ____________________________________________________________
consensus             TACCATATATTGATTCTCCACCTCGCCCATCACCAAGAGTGAAGTCACCTCCCTGGATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TGAAGCTAGGGATGATCCTATGAAAAGCACTCCCCTTGTAGTGGAGAAGTTTCCCACTCT
JMSF004I10+           TGAAGCTAGGGATGATCCTATGAAAAGCACTCCCCTTGTAGTGGAGAAGTTTCCCACTCT
JMSF001G10+           TGAAGCTAGGGATGATCCTATGAAAAGCACTCCCCTTGTAGTGGAGAAGTTTCCCACTCT
                      ____________________________________________________________
consensus             TGAAGCTAGGGATGATCCTATGAAAAGCACTCCCCTTGTAGTGGAGAAGTTTCCCACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TTCCCGTTCCTTTTTCTCCTGTGCAAAGAGCTCGAAAGTTTTCTGCTGTTTTTGGAACAA
JMSF004I10+           TTCCCGTTCCTTTTTCTCCTGTGCAAAGAGCTCGAAAGTTTTCTGCTGTTTTTGGAACAA
JMSF001G10+           TTCCCGTTCCTTTTTCTCCTGTGCAAAGAGCTCGAAAGTTTTCTGCTGTTTTTGGAACAA
                      ____________________________________________________________
consensus             TTCCCGTTCCTTTTTCTCCTGTGCAAAGAGCTCGAAAGTTTTCTGCTGTTTTTGGAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G10-          TTTTCCCAAAGAGACCCATGACAATACGACCAGCAGGNTTTCCATTAATT          
JMSF004I10+           TTTTCCCAAAGAGACCCATGACAATACGACCAGCAGGTTTTCCATTAATTTCAATGTCGA
JMSF001G10+           TTTTCCCAAAGAGACCCATGACAATACGACCAGCAGGTTTTCCATTAATTTCAATGTCGA
                      ____________________________________________________________
consensus             TTTTCCCAAAGAGACCCATGACAATACGACCAGCAGGTTTTCCATTAATTTCAATGTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004I10+           AATACACTTTGTGCGTAACACCCTCTAGATCTTCAGTAGTTATCGCCTCATTATTAATTT
JMSF001G10+           AATACACTTTGTGCGTAACACCCTCTAGATCTTCAGTAGTTATCGCCTCATTATTAATTT
                      ____________________________________________________________
consensus             AATACACTTTGTGCGTAACACCCTCTAGATCTTCAGTAGTTATCGCCTCATTATTAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004I10+           TTTTCTCGCCAGATGAAACTGCAGCATCATTCAATCGGTTCAGAATGAGAGCTAGGGTTA
JMSF001G10+           TTTTCTCGCCAGATGAAACTGCAGCATCATTCAATCGGTTCAGAATGAGAGCTAGGGTTA
                      ____________________________________________________________
consensus             TTTTCTCGCCAGATGAAACTGCAGCATCATTCAATCGGTTCAGAATGAGAGCTAGGGTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004I10+           CGAACATGATCAGAACCCAGAGGAGTACGACTGGAAGCAGATTTTTCCGATTGTTGGCCA
JMSF001G10+           CGAACATGATCAGAACCCAGAGGAGTACGACTGGAAGCAGATTTTTCCGATTGTTGGCCA
                      ____________________________________________________________
consensus             CGAACATGATCAGAACCCAGAGGAGTACGACTGGAAGCAGATTTTTCCGATTGTTGGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF004I10+           TTTCGCTATCTCCCTCCCGCGCGCGCGCGTGGTCTCGTTCTATATATATCTCTCCTGTTC
JMSF001G10+           TTTCGCTATCTCCCTCCCGCGCGCGCGCGTGGTCTCGTTCTATATATATCTCTCCTGTTC
                      ____________________________________________________________
consensus             TTTCGCTATCTCCCTCCCGCGCGCGCGCGTGGTCTCGTTCTATATATATCTCTCCTGTTC