Contig 002038:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015N08Sequence528002038 (6)ref|XP_011081024.1|3e-39PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum 678004223 (7)ref|XP_011081024.1|3e-77PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum
JMFF025A02Sequence537002038 (6)ref|XP_011081024.1|5e-35PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum 754004223 (7)ref|XP_011081022.1|5e-106PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Sesamum
JMSF001F16Sequence242002038 (6)657004223 (7)ref|XP_011081024.1|6e-97PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum
JMSF011O17Sequence298002038 (6)ref|XP_011081024.1|5e-08PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum 659004223 (7)ref|XP_011081024.1|6e-87PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum
JMSF014H18Sequence470002038 (6)ref|XP_011081024.1|3e-24PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum 805004223 (7)ref|XP_011081022.1|6e-100PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Sesamum
JMSF035M01Sequence630002038 (6)ref|XP_011081024.1|2e-41PREDICTED: probable NOT transcription complex subunit VIP2 isoform X2 [Sesamum 687004223 (7)ref|XP_011081022.1|9e-98PREDICTED: probable NOT transcription complex subunit VIP2 isoform X1 [Sesamum

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035M01+                                      CATCGGCACTTAGACCCCTACCAATATTGCTCC
                      ____________________________________________________________
consensus                                        CATCGGCACTTAGACCCCTACCAATATTGCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+                                               CTCCTATGTTAGTTGCCCCTGAAT
JMSF035M01+           CACTAACAATATTAGTCATTGAATTTCCAATTCTTCCTCCTATGTTAGTTGCCCCTGAAT
                      ____________________________________________________________
consensus             CACTAACAATATTAGTCATTGAATTTCCAATTCTTCCTCCTATGTTAGTTGCCCCTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           GTCCATGAGAGCTTGCAAGCGATAACTGAGAAAGCACAGTTGGAATGTTATTTATTGAAA
JMSF035M01+           GTCCATGAGAGCTTGCAAGCGATAACTGAGAAAGCACAGTTGGAATGTTATTTATTGAAA
JMFF025A02+            TCCATGAGAGCTTGCAAGCGATAACTGAGAAAGCACAGTTGGAATGTTATTTATTGAAA
                      ____________________________________________________________
consensus             GTCCATGAGAGCTTGCAAGCGATAACTGAGAAAGCACAGTTGGAATGTTATTTATTGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           ATCTCCCATTAGAAACATTTCCTGCTTGTTGAACACTGCCAGAAGGACCACCAGTCATAG
JMSF035M01+           ATCTCCCATTAGAAACATTTCCTGCTTGTTGAACACTGCCAGAAGGACCACCAGTCATAG
JMSF014H18+                  ATTAGAAACATTTCCTGCTTGTTGAACACTGCCAGAAGGACCACCAGTCATAG
JMFF025A02+           ATCTCCCATTAGAAACATTTCCTGCTTGTTGAACACTGCCAGAAGGACCACCAGTCATAG
                      ____________________________________________________________
consensus             ATCTCCCATTAGAAACATTTCCTGCTTGTTGAACACTGCCAGAAGGACCACCAGTCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           CTGAATTTCTTGATGCAAATGTACCATGCACATTTGACATATTGAAATTCCCATGAATGC
JMSF035M01+           CTGAATTTCTTGATGCAAATGTACCATGCACATTTGACATATTGAAATTCCCATGAATGC
JMSF014H18+           CTGAATTTCTTGATGCAAATGTACCATGCACATTTGACATATTGAAATTCCCATGAATGC
JMFF025A02+           CTGAATTTCTTGATGCAAATGTACCATGCACATTTGACATATTGAAATTCCCATGAATGC
                      ____________________________________________________________
consensus             CTGAATTTCTTGATGCAAATGTACCATGCACATTTGACATATTGAAATTCCCATGAATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           CCTGCAGGCTTTGCACTGTTCCACCAGAGTGATTCAATACAGTGGCAGTGGAACCTGACT
JMSF035M01+           CCTGCAGGCTTTGCACTGTTCCACCAGAGTGATTCAATACAGTGGCAGTGGAACCTGACT
JMSF014H18+           CCTGCAGGCTTTGCACTGTTCCACCAGAGTGATTCAATACAGTGGCAGTGGAACCTGACT
JMSF011O17+                                       GTGATTCAATACAGTGGCAGTGGAACCTGACT
JMFF025A02+           CCTGCAGGCTTTGCACTGTTCCACCAGAGTGATTCAATACAGTGGCAGTGGAACCTGACT
                      ____________________________________________________________
consensus             CCTGCAGGCTTTGCACTGTTCCACCAGAGTGATTCAATACAGTGGCAGTGGAACCTGACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
JMSF035M01+           GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
JMSF014H18+           GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
JMSF011O17+           GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
JMFF025A02+           GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
                      ____________________________________________________________
consensus             GTGCTGAAAATGAAGTGGCCAAAGCTCTAGCAGTGGTTTCTGGAAGGTTTGAAGCTGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
JMSF035M01+           CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
JMSF014H18+           CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
JMSF011O17+           CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
JMFF025A02+           CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
                      ____________________________________________________________
consensus             CATTCAATCCCGAATTTAGTAGCCCTGACATTGCAGAATATGATTGAATACTCAAAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTTGATAGAAGCCAGCA
JMSF035M01+           ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTTGATAGAAGCCAGCA
JMSF014H18+           ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTCGATAGAAGCCAGCA
JMSF011O17+           ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTTGATAGAAGCCAGCA
JMFF025A02+           ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTTGATAGAAGCCAGCA
                      ____________________________________________________________
consensus             ACTGCAATGAATCATTCCCTGCCCAAAGCAAGCTCTTGTTGATCTTGATAGAAGCCAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF015N08+           AGGAGAAGTTCCC                                               
JMSF035M01+           AGGAGAAGTTCCCTTTGAGACTCTTAGAAATAGAAAGTGCAGAGACCAGAGAGTGATGTT
JMSF014H18+           AGGAGAAGTTCCCTTTGAGACTCTTAGAAATAGAAAGTGCAGAGACCAGAGAGTGATGTT
JMSF011O17+           AGGAGAAGTTCCC                                               
JMFF025A02+           AGGAGAAGTTCCCTTTGAGACTCTTAGAAATAGAAAGTGCAGAGACCAGAGAGTGATGTT
JMSF001F16+                      CCTTTGAGACTCTTAGAAATAGAAAGTGCAGAGACCAGAGAGTGATGTT
                      ____________________________________________________________
consensus             AGGAGAAGTTCCCTTTGAGACTCTTAGAAATAGAAAGTGCAGAGACCAGAGAGTGATGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF035M01+           TGAATGCGGGGGTCCGCCAAGCCGATGATAATGGTTATGTAGCTTTCGATTCGA      
JMSF014H18+           TGAATGCGGGGGTCCGCCAAGCCGATGATAATGGTTATGTAGCTTTCGATTCGA      
JMFF025A02+           TGAATGCGGGGGTCCGCCAAGCCGATGATAATGGTTATGTAGCTTTCGATTCGA      
JMSF001F16+           TGAATGCGGGGGTCCGCCAAGCCGATGATAATGGTTATGTAGCTTTCGATTCGACCCCCC
                      ____________________________________________________________
consensus             TGAATGCGGGGGTCCGCCAAGCCGATGATAATGGTTATGTAGCTTTCGATTCGACCCCCC