Contig 002030:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS120B01Sequence627002030 (2)gb|KDO53523.1|4e-134hypothetical protein CISIN_1g0013573mg, partial [Citrus sinensis] gb|KDO53524.1|
JMFS164C05Sequence607002030 (2)ref|XP_007012673.1|7e-83Binding isoform 4 [Theobroma cacao] gb|EOY30292.1| Binding isoform 4 [Theobroma

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+                                                                    TGT
                      ____________________________________________________________
consensus                                                                      TGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           GACTTAGTCGGCCCATGATTAGTAACAGCAAGTGCAGTTTCAGTAAGTTGCTCAACCAGA
                      ____________________________________________________________
consensus             GACTTAGTCGGCCCATGATTAGTAACAGCAAGTGCAGTTTCAGTAAGTTGCTCAACCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           AAATGTTGACCAGTAAAGAAAAAATGATTGGCTAAGTAGTTTAGTGACATTGCGCAATAA
                      ____________________________________________________________
consensus             AAATGTTGACCAGTAAAGAAAAAATGATTGGCTAAGTAGTTTAGTGACATTGCGCAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           GGATATATCTCGAAAGCTTTTTGCATCTTTTCCATTCCTCCCCTAATGCCACCAGCTTCA
                      ____________________________________________________________
consensus             GGATATATCTCGAAAGCTTTTTGCATCTTTTCCATTCCTCCCCTAATGCCACCAGCTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           TTAGTTTGCAAATCCAGAATAGCAAGTGCAACAAGAGCTTCCACATTTTCTGGATCTAAC
                      ____________________________________________________________
consensus             TTAGTTTGCAAATCCAGAATAGCAAGTGCAACAAGAGCTTCCACATTTTCTGGATCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           TCCAAGACACGCTGAAATGCTTGCTTTGCCTTCACAAGTTGACCCAATTTATATCGGCAA
                      ____________________________________________________________
consensus             TCCAAGACACGCTGAAATGCTTGCTTTGCCTTCACAAGTTGACCCAATTTATATCGGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           AGACCAATTCCAAGTCTTACAGCAGCAGGACATTGAGGGTACACTTGCAAGGCCCTCTTA
                      ____________________________________________________________
consensus             AGACCAATTCCAAGTCTTACAGCAGCAGGACATTGAGGGTACACTTGCAAGGCCCTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           TATAACTCCAATGAATCAGAATATCGTCCCCGGCTAAACTGAACACATGCCTGACCAAGA
                      ____________________________________________________________
consensus             TATAACTCCAATGAATCAGAATATCGTCCCCGGCTAAACTGAACACATGCCTGACCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           AGAGCAGGCACATTATCTCGATCTCCATCCAGTACAATCTTGAAGGCAGCAAATGCCTGT
                      ____________________________________________________________
consensus             AGAGCAGGCACATTATCTCGATCTCCATCCAGTACAATCTTGAAGGCAGCAAATGCCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           TCTAGATCTCCTTTGGCCAGTAAAAGCTGACCTTTCCCAACCCAGGTAGAAGGCTCGTGC
JMFS164C05+                                        ACCTTTCCCAACCCAGGTAGAAGGCTCGTGC
                      ____________________________________________________________
consensus             TCTAGATCTCCTTTGGCCAGTAAAAGCTGACCTTTCCCAACCCAGGTAGAAGGCTCGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           ATGTCAATCCTTGACGCCTTATTATAGTACTGAGTTGCCATTATAAAGTGATCCTCCTTC
JMFS164C05+           ATGTCAATCCTTGACGCCTTATTATAGTACTGAGTTGCCATTATAAAGTGATCCTCCTTC
                      ____________________________________________________________
consensus             ATGTCAATCCTTGACGCCTTATTATAGTACTGAGTTGCCATTATAAAGTGATCCTCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS120B01+           TCTCTATGTTTTGTCTCGATCTTC                                    
JMFS164C05+           TCTCTATGTTTTGTCTCGATCTTCCCAAGATAGCTATAATATGCCCCCAATGCATTTAGA
                      ____________________________________________________________
consensus             TCTCTATGTTTTGTCTCGATCTTCCCAAGATAGCTATAATATGCCCCCAATGCATTTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           ATAGCAATTCTATCATACCTCACATCCGCATAATATTCATCAATGTCTGGACTAGATCCC
                      ____________________________________________________________
consensus             ATAGCAATTCTATCATACCTCACATCCGCATAATATTCATCAATGTCTGGACTAGATCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           TCCTCCAATATTTGCCGAAACTGTTCAATTTTGCCTTGTTTGAAATACTCCCTAGCGATA
                      ____________________________________________________________
consensus             TCCTCCAATATTTGCCGAAACTGTTCAATTTTGCCTTGTTTGAAATACTCCCTAGCGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           ATTAGCCAGAGATCAAGAGGAGCTTGCTCGGCTTTAAGAATGTCGAGTATATCAGAAGCG
                      ____________________________________________________________
consensus             ATTAGCCAGAGATCAAGAGGAGCTTGCTCGGCTTTAAGAATGTCGAGTATATCAGAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           TCTCTTGGAAGCTGGTCCAGGGCGACTAGTACCTCCTCCTCCGAGTTCTGCACCGGAATA
                      ____________________________________________________________
consensus             TCTCTTGGAAGCTGGTCCAGGGCGACTAGTACCTCCTCCTCCGAGTTCTGCACCGGAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           TATACACAGGCCATTTGAGCTCGGACTTCCAGTCAAATCAAACCGAGTAGGCAACTTTAA
                      ____________________________________________________________
consensus             TATACACAGGCCATTTGAGCTCGGACTTCCAGTCAAATCAAACCGAGTAGGCAACTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS164C05+           ATTCAGTGGCGATTTTGAGATAAACAAAACCCTAACTTTTTCTGTATCCGAAAGAATGAA
                      ____________________________________________________________
consensus             ATTCAGTGGCGATTTTGAGATAAACAAAACCCTAACTTTTTCTGTATCCGAAAGAATGAA