Contig 002028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001I18Sequence156002028 (4)734008946 (4)ref|XP_002521706.1|2e-70plant ubiquilin, putative [Ricinus communis] gb|EEF40693.1| plant ubiquilin, put
JMFN044O15Sequence617002028 (4)ref|XP_009757928.1|1e-40PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana
JMFS028E04Sequence638002028 (4)ref|XP_009757928.1|1e-40PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana
JMFS160H08Sequence608002028 (4)ref|XP_009757928.1|4e-45PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN044O15+ GAAATAATGAAGCTCCAGGTCCTG
                      ____________________________________________________________
consensus GAAATAATGAAGCTCCAGGTCCTG
 
. : . : . : . : . : . :
JMFN044O15+ ATCCTCCAAATGCTCCACCAACATTTGGAGCAGCATCCCTTGAGGCATTTTGGTTAGTAT
JMFS160H08+ GCATTTTGGTTAGTAT
                      ____________________________________________________________
consensus ATCCTCCAAATGCTCCACCAACATTTGGAGCAGCATCCCTTGAGGCATTTTGGTTAGTAT
 
. : . : . : . : . : . :
JMFN044O15+ TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
JMFS028E04+ ACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
JMFS160H08+ TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
                      ____________________________________________________________
consensus TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
 
. : . : . : . : . : . :
JMFN044O15+ GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
JMFS028E04+ GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
JMFS160H08+ GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
                      ____________________________________________________________
consensus GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
 
. : . : . : . : . : . :
JMFN044O15+ TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
JMFS028E04+ TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
JMFS160H08+ TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
                      ____________________________________________________________
consensus TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
 
. : . : . : . : . : . :
JMFN044O15+ CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
JMFS028E04+ CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
JMFS160H08+ CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
                      ____________________________________________________________
consensus CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
 
. : . : . : . : . : . :
JMFN044O15+ AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
JMFS028E04+ AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
JMFS160H08+ AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
                      ____________________________________________________________
consensus AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
 
. : . : . : . : . : . :
JMFN044O15+ CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
JMFS028E04+ CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
JMFF001I18+ ACATTAG
JMFS160H08+ CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
                      ____________________________________________________________
consensus CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
 
. : . : . : . : . : . :
JMFN044O15+ CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFS028E04+ CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFF001I18+ CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFS160H08+ CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
                      ____________________________________________________________
consensus CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
 
. : . : . : . : . : . :
JMFN044O15+ ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
JMFS028E04+ ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAG
JMFF001I18+ ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
JMFS160H08+ ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
                      ____________________________________________________________
consensus ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
 
. : . : . : . : . : . :
JMFN044O15+ AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAA
JMFF001I18+ AAGAACACAATCGATGCCCTAGTTCTCTC
JMFS160H08+ AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAAGAGGAAA
                      ____________________________________________________________
consensus AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAAGAGGAAA