Contig 002028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001I18Sequence156002028 (4)734008946 (4)ref|XP_002521706.1|2e-70plant ubiquilin, putative [Ricinus communis] gb|EEF40693.1| plant ubiquilin, put
JMFN044O15Sequence617002028 (4)ref|XP_009757928.1|1e-40PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana
JMFS028E04Sequence638002028 (4)ref|XP_009757928.1|1e-40PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana
JMFS160H08Sequence608002028 (4)ref|XP_009757928.1|4e-45PREDICTED: ubiquitin domain-containing protein DSK2b-like isoform X1 [Nicotiana

Alignment

This contig is upended


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JMFN044O15+                                               GAAATAATGAAGCTCCAGGTCCTG
                      ____________________________________________________________
consensus                                                 GAAATAATGAAGCTCCAGGTCCTG
 
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JMFN044O15+           ATCCTCCAAATGCTCCACCAACATTTGGAGCAGCATCCCTTGAGGCATTTTGGTTAGTAT
JMFS160H08+                                                       GCATTTTGGTTAGTAT
                      ____________________________________________________________
consensus             ATCCTCCAAATGCTCCACCAACATTTGGAGCAGCATCCCTTGAGGCATTTTGGTTAGTAT
 
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JMFN044O15+           TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
JMFS028E04+                                 ACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
JMFS160H08+           TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
                      ____________________________________________________________
consensus             TTGGAGCTCCAGGAGCAGTTGCACCTGCATTATTTGTAGAGGTAGCTGGAGCAAAGCCAC
 
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JMFN044O15+           GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
JMFS028E04+           GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
JMFS160H08+           GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
                      ____________________________________________________________
consensus             GAACCAAATGAACAGTGTGATCTGCCTTCAAACCATAGCTGTCTAGGGTTTGCTCATCCT
 
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JMFN044O15+           TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
JMFS028E04+           TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
JMFS160H08+           TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
                      ____________________________________________________________
consensus             TTAAGATCCGACCCTTGTAGATCAACCGCTGCTGCTCAGCGGGGATGTCGCAGTGCTGAG
 
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JMFN044O15+           CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
JMFS028E04+           CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
JMFS160H08+           CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
                      ____________________________________________________________
consensus             CGAGGAGGGACTTGAAGGATCCGACGGGAGAATCGAGGGTGGCCTGCACTGAGAATTTTG
 
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JMFN044O15+           AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
JMFS028E04+           AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
JMFS160H08+           AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
                      ____________________________________________________________
consensus             AGCCGTTGGAGCAGCGGATGTTGATATTCACAGCTTCGCCATCAGACCCGCAGGCGGCGG
 
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JMFN044O15+           CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
JMFS028E04+           CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
JMFF001I18+                                                                ACATTAG
JMFS160H08+           CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
                      ____________________________________________________________
consensus             CGGTCGCGCTATTCTCGTTGTTCTTCGAATTGTCCCCGTCGTTGTTCCCCGCAACATTAG
 
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JMFN044O15+           CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFS028E04+           CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFF001I18+           CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
JMFS160H08+           CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
                      ____________________________________________________________
consensus             CATCGCCGCCCCCCATACTCAACTGGTCAAGTGGAGATTCCCCGCAACAATCCCAATTCC
 
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JMFN044O15+           ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
JMFS028E04+           ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAG                      
JMFF001I18+           ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
JMFS160H08+           ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
                      ____________________________________________________________
consensus             ACCGGACGGCAATCGAAACGGAAGGATGCGACTTCGAGCTGCCGATCAATCTAGGAGAAG
 
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JMFN044O15+           AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAA       
JMFF001I18+           AAGAACACAATCGATGCCCTAGTTCTCTC                               
JMFS160H08+           AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAAGAGGAAA
                      ____________________________________________________________
consensus             AAGAACACAATCGATGCCCTAGTTCTCTCAGGTGAAGAATATAGAGACACAAAGAGGAAA