Contig 002026:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS125F05Sequence575002026 (3)emb|CDO97014.1|1e-44unnamed protein product [Coffea canephora]
JMFS133C10Sequence619002026 (3)ref|XP_007042088.1|1e-51RNA-binding family protein, putative [Theobroma cacao] gb|EOX97919.1| RNA-bindin
JMFS157A10Sequence614002026 (3)ref|XP_007042088.1|2e-49RNA-binding family protein, putative [Theobroma cacao] gb|EOX97919.1| RNA-bindin

Alignment

This contig is upended


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JMFS133C10+            TTCAACAGGCAAAGTGTCATCCCTATCCCTTTCCTGAGGAGCCTTGTCTTGACTTCCCT
JMFS157A10+                                                         GTCTTGACTTCCCT
                      ____________________________________________________________
consensus              TTCAACAGGCAAAGTGTCATCCCTATCCCTTTCCTGAGGAGCCTTGTCTTGACTTCCCT
 
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JMFS133C10+           TTGATTGACGCTGTTCAAGAGGAGCCCGATGCATTGCATGCTTGACTCCAAGTTTTCTCC
JMFS125F05+                               GGAGCCCGATGCATTGCATGCTTGACTCCAAGTTTTCTCC
JMFS157A10+           TTGATTGACGCTGTTCAAGAGGAGCCCGATGCATTGCATGCTTGACTCCAAGTTTTCTCC
                      ____________________________________________________________
consensus             TTGATTGACGCTGTTCAAGAGGAGCCCGATGCATTGCATGCTTGACTCCAAGTTTTCTCC
 
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JMFS133C10+           CTCCAACTGTTGAGCCATTTTTGAGTTCAATAGCACGACCAGCGTCTTCAACTGAGGCAA
JMFS125F05+           CTCCAACTGTTGAGCCATTTTTGAGTTCAATAGCACGACCAGCGTCTTCAACTGAGGCAA
JMFS157A10+           CTCCAACTGTTGAGCCATTTTTGAGTTCAATAGCACGACCAGCGTCTTCAACTGAGGCAA
                      ____________________________________________________________
consensus             CTCCAACTGTTGAGCCATTTTTGAGTTCAATAGCACGACCAGCGTCTTCAACTGAGGCAA
 
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JMFS133C10+           ATTGCACAAAGCCAAAACCTCGGTGTTCAGTAGACCCTTTTTTTGTTACTAAAAAGCATC
JMFS125F05+           ATTGCACAAAGCCAAAACCTCGGTGTTCAGTAGACCCTTTTTTTGTTACTAAAAAGCATC
JMFS157A10+           ATTGCACAAAGCCAAAACCTCGGTGTTCAGTAGACCCTTTTTTTGTTACTAAAAAGCATC
                      ____________________________________________________________
consensus             ATTGCACAAAGCCAAAACCTCGGTGTTCAGTAGACCCTTTTTTTGTTACTAAAAAGCATC
 
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JMFS133C10+           TTCTGATGGGGCCAACTTCACTGAACGTTTGTTCTAGCTCAGTGTTGCTAAAGGAGAAAG
JMFS125F05+           TTCTGATGGGGCCAACTTCACTGAACGTTTGTTCTAGCTCAGTGTTGCTAAAGGAGAAAG
JMFS157A10+           TTCTGATGGGGCCAACTTCACTGAACGTTTGTTCTAGCTCAGTGTTGCTAAAGGAGAAAG
                      ____________________________________________________________
consensus             TTCTGATGGGGCCAACTTCACTGAACGTTTGTTCTAGCTCAGTGTTGCTAAAGGAGAAAG
 
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JMFS133C10+           GCAAGTTAGAAATGAAGACGGTGGAGGGAGAGTATTGGCTATCGCCATTAGCCTTGTTCG
JMFS125F05+           GCAAGTTAGAAATGAAGACGGTGGAGGGAGAGTATTGGCTATCGCCATTAGCCTTGTTCG
JMFS157A10+           GCAAGTTAGAAATGAAGACGGTGGAGGGAGAGTATTGGCTATCGCCATTAGCCTTGTTCG
                      ____________________________________________________________
consensus             GCAAGTTAGAAATGAAGACGGTGGAGGGAGAGTATTGGCTATCGCCATTAGCCTTGTTCG
 
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JMFS133C10+           TCTTCTTCTTTCCCATGTCCGAGACGGCGATGTAGTTCGCGAGCAACGGAGAGAGAAATC
JMFS125F05+           TCTTCTTCTTTCCCATGTCCGAGACGGCGATGTAGTTCGCGAGCAACGGAGAGAGAAATC
JMFS157A10+           TCTTGGTCGTTCCCATGTCCGAGACGGCGATGTAGTTCGCGAGCAACGGAGAGAGAAATC
                      ____________________________________________________________
consensus             TCTTCTTCTTTCCCATGTCCGAGACGGCGATGTAGTTCGCGAGCAACGGAGAGAGAAATC
 
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JMFS133C10+           GCACCAAAAGATTTTGCGAAGAACCCTCGCGCAGGTCTTGGTGGGTTCGGCGGTGTTGGA
JMFS125F05+           GCACCAAAAGATTTTGCGAAGAACCCTCGCGCAGGTCTTGGTGGGTTCGGCGGTGTTGGA
JMFS157A10+           GCACCAAAAGATTTTGCGAAGAACCCTCGCGCAGGTCTTGGTGGGTTCGGCGGTGTTGGA
                      ____________________________________________________________
consensus             GCACCAAAAGATTTTGCGAAGAACCCTCGCGCAGGTCTTGGTGGGTTCGGCGGTGTTGGA
 
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JMFS133C10+           CGTGGCTTCTGTCTGCTGCGGCGGTCTGCTTCACGGTGCTAGGTACGTGGACGTCGCCGG
JMFS125F05+           CGTGGCTTCTGTCTGCTGCGGCGGTCTGCTTCACGGTGCTAGGTACGTGGACGTCGCCGG
JMFS157A10+           CGTGGCTTCTGTCTGCTGCGGCGGTCTGCTTCACGGTGCTAGGTACGTGGACGTCGCCGG
                      ____________________________________________________________
consensus             CGTGGCTTCTGTCTGCTGCGGCGGTCTGCTTCACGGTGCTAGGTACGTGGACGTCGCCGG
 
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JMFS133C10+           CGGTGATGGAGGCTGCGGTCTGCTGCGGCGGAGGACGTGGCTTCACGTGAACGTCGCCGG
JMFS125F05+           CGGTGATGGAGGCTGCGGTCTGCTGCGGCGGAGGACGTGGCTTCACGTGAACGTCGCCGG
JMFS157A10+           CGGTGATGGAGGCTGCGGTCTGCTGCGGCGGAGGACGTGGCTTCACGTGAACGTCGCCGG
                      ____________________________________________________________
consensus             CGGTGATGGAGGCTGCGGTCTGCTGCGGCGGAGGACGTGGCTTCACGTGAACGTCGCCGG
 
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JMFS133C10+           CGGTCTGCTGTCTGCCAGAA                                        
JMFS125F05+           CGGTCTGCTGTCTGCCAGAAGAGTAGTTTTTTTTTTTTTTTTTGGTGCAGCTTGA     
JMFS157A10+           CGGTCTGCTGTCTGCCAGAAGAGTAGTTTTTTTTTTTTTTTTTGGTGCAGCTTGAGCCTT
                      ____________________________________________________________
consensus             CGGTCTGCTGTCTGCCAGAAGAGTAGTTTTTTTTTTTTTTTTTGGTGCAGCTTGAGCCTT