Contig 002022:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFF038B23+                                                            ATGATACGCAA
JMFS155E02+                                                        TAGGATGATACGCAA
                      ____________________________________________________________
consensus                                                          TAGGATGATACGCAA
 
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JMFF038B23+           ACGATCAGGCCAAGATAGACAAAATACAAAGCGTACTTAGAGACTTCATGGGTCATGCTA
JMFS009H02+            CGATCAGGCCAAGATAGACAAAATACAAAGCGTACTTAGAGACTTCATGGGTCATGCTA
JMFS155E02+           ACGATCAGGCCAAGATAGACAAAATACAAAGCGTACTTAGAGACTTCATGGGTCATGCTA
                      ____________________________________________________________
consensus             ACGATCAGGCCAAGATAGACAAAATACAAAGCGTACTTAGAGACTTCATGGGTCATGCTA
 
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JMFF038B23+           TGGAAATCAGTNTGGTTTTTGCCGAACCCATTCACCATCTCCCCGAAGAGGAGGAAGAAG
JMFS009H02+           TGGAAATCAGTCTGGTTTTTGCCGAACCCATTCACCATCTCCCCGAAGAGGAGGAAGAAG
JMFS155E02+           TGGAAATCAGTCTGGTTTTTGCCGAACCCATTCACCATCTCCCCGAAGAGGAGGAAGAAG
                      ____________________________________________________________
consensus             TGGAAATCAGTCTGGTTTTTGCCGAACCCATTCACCATCTCCCCGAAGAGGAGGAAGAAG
 
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JMFF038B23+           ACGGGCATNGAAGAGCCATGAACAATGGCGCCCAAGCTTCCCAGGATCATCAGCCCCCAA
JMFS009H02+           ACGGGCATGGAAGAGCCATGAACAATGGCGCCCAAGCTTCCCAGGATCATCAGCCCCCAA
JMFS155E02+           ACGGGCATGGAAGAGCCATGAACAATGGCGCCCAAGCTTCCCAGGATCATCAGCCCCCAA
                      ____________________________________________________________
consensus             ACGGGCATGGAAGAGCCATGAACAATGGCGCCCAAGCTTCCCAGGATCATCAGCCCCCAA
 
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JMFF038B23+           TCATATTTATCAGCGAAACAAAACAGCTCGTGAAAAGGAACGCTCTGCTCCTTCTTCTTC
JMFS009H02+           TCATATTTATCAGCGAAACAAAACAGCTCGTGAAAAGGAACGCTCTGCTCCTTCTTCTTC
JMFS155E02+           TCATATTTATCAGCGAAACAAAACAGCTCGTGAAAAGGAACGCTCTGCTCCTTCTTCTTC
                      ____________________________________________________________
consensus             TCATATTTATCAGCGAAACAAAACAGCTCGTGAAAAGGAACGCTCTGCTCCTTCTTCTTC
 
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JMFF038B23+           TCCGCCTCCGGCATTGCTTTCCCGTCAGCACCCTCCGCCATTAAAACACCGCAACTCTAA
JMFS009H02+           TCCGCCTCCGGCATTGCTTTCCCGTCAGCACCCTCCGCCATTAAAACACCGCAACTCTAA
JMFS159D04+                          GCTTTCCCGTCAGCACCCTCCGCCATTAAAACACCGCAACTCTAA
JMFS155E02+           TCCGCCTCCGGCATTGCTTTCCCGTCAGCACCCTCCGCCATTAAAACACCGCAACTCTAA
                      ____________________________________________________________
consensus             TCCGCCTCCGGCATTGCTTTCCCGTCAGCACCCTCCGCCATTAAAACACCGCAACTCTAA
 
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JMFF038B23+           CACCGACCAAAGCAACTAACAGCCTCTTCCTCGCCGTGAAAATTAAACACCAAGTTCGGA
JMFS009H02+           CACCGACCAAAGCAACTAACAGCCTCTTCCTCGCCGTGAAAATTAAACACCAAGTTCGGA
JMFS159D04+           CACCGACCAAAGCAACTAACAGCCTCTTCCTCGCCGTGAAAATTAAACACCAAGTTCGGA
JMFS155E02+           CACCGACCAAAGCAACTAACAGCCTCTTCCTCGCCGTGAAAATTAAACACCAAGTTCGGA
                      ____________________________________________________________
consensus             CACCGACCAAAGCAACTAACAGCCTCTTCCTCGCCGTGAAAATTAAACACCAAGTTCGGA
 
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JMFF038B23+           AACTCAATCAGTTCGCCATGGCAGACAAACACGCCGGCCGGAAATGAAAAGCTAGCTAGC
JMFS009H02+           AACTCAATCAGTTCGCCATGGCAGACAAACACGCCGGCCGGAAATGAAAAGCTAGCTAGC
JMFS159D04+           AACTCAATCAGTTCGCCATGGCAGACAAACACGCCGGCCGGAAATGAAAAGCTAGCTAGC
JMFS155E02+           AACTCAATCAGTTCGCCATGGCAGACAAACACGCCGGCCGGAAATGAAAAGCTAGCTAGC
                      ____________________________________________________________
consensus             AACTCAATCAGTTCGCCATGGCAGACAAACACGCCGGCCGGAAATGAAAAGCTAGCTAGC
 
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JMFF038B23+           TGAGCCGGCGGATCGGAGATGGATCTAAAGCTTAATTAAAACGCACCCTTTTCGAATATT
JMFS009H02+           TGAGCCGGCGGATCGGAGATGGATCTAAAGCTTAATTAAAACGCACCCTTTTCGAATATT
JMFS159D04+           TGAGCCGGCGGATCGGAGATGGATCTAAAGCTTAATTAAAACGCACCCTTTTCGAATATT
JMFS155E02+           TGAGCCGGCGGATCGGAGATGGATCTAAAGCTTAATTAAAACGCACCCTTTTCGAATATT
                      ____________________________________________________________
consensus             TGAGCCGGCGGATCGGAGATGGATCTAAAGCTTAATTAAAACGCACCCTTTTCGAATATT
 
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JMFF038B23+           CTTCTCTCCGTTCGCCAACTCGATCTTGAGATTATACGGAGAGAAGCCGGAGTTATAGAA
JMFS009H02+           CTTCTCTCCGTTCGCCAACTCGATCTTGAGATTATACGGAGAGAAGCCGGAGTTATAGAA
JMFS159D04+           CTTCTCTCCGTTCGCCAACTCGATCTTGAGATTATACGGAGAGAAGCCGGAGTTATAGAA
JMFS155E02+           CTTCTCTCCGTTCGCCAACTCGATCTTGAGATTATACGGAGAGAAGCCGGAGTTATAGAA
                      ____________________________________________________________
consensus             CTTCTCTCCGTTCGCCAACTCGATCTTGAGATTATACGGAGAGAAGCCGGAGTTATAGAA
 
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JMFF038B23+           AGAGAGAGAAAGATTGGGTCGCCGGAGAAAGACCAGTAGTC                   
JMFS009H02+           AGAGAGAGAAAGATTGGGTCGCCGGAGAAAGACCAGTAGTC                   
JMFS159D04+           AGAGAGAGAAAGATTGGGTCGCCGGAGAAAGACCAGTAGTCAAATGACAAGTGAGAAGGA
JMFS155E02+           AGAGAGAGAAAGATTGGGTCGCCGGAGAAAGACCAGTAGTCAAATGACAAGTGAGAAGGA
                      ____________________________________________________________
consensus             AGAGAGAGAAAGATTGGGTCGCCGGAGAAAGACCAGTAGTCAAATGACAAGTGAGAAGGA