Contig 002014:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS062C07Sequence619002014 (4)ref|XP_006364743.1|5e-44PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Sola
JMFS072H09Sequence627002014 (4)ref|XP_006364743.1|6e-44PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like [Sola
JMFS150A01Sequence552002014 (4)ref|XP_009603592.1|9e-30PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Nicotiana
JMSF028H10Sequence638002014 (4)ref|XP_009766676.1|3e-38PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Nicotiana764005707 (2)ref|XP_011071216.1|6e-84PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Sesamum i

Alignment

This contig is upended


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JMFS072H09+                                                   TCATGGGATGAACTCTTAGT
                      ____________________________________________________________
consensus                                                     TCATGGGATGAACTCTTAGT
 
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JMFS072H09+           CCTTGATCTTCCAGTAGATGGAGTTGGAACCTGATAGTCTTCATCAGAGCGAGGCCTCAA
JMFS062C07+           CCTTGATCTTCCAGTAGATGGAGTTGGAACCTGATAGTCTTCATCAGAGCGAGGCCTCAA
JMSF028H10+                                               GTCTTCATCAGAGCGAGGCCTCAA
                      ____________________________________________________________
consensus             CCTTGATCTTCCAGTAGATGGAGTTGGAACCTGATAGTCTTCATCAGAGCGAGGCCTCAA
 
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JMFS072H09+           GACTGTCTCATTCTCTCGTCCTTCTTCAGTAACTGTAATCCCTGAGATAGAAGTCTCGCT
JMFS062C07+           GACTGTCTCATTCTCTCGTCCTTCTTCAGTAACTGTAATCCCTGAGATAGAAGTCTCGCT
JMSF028H10+           GACTGTCTCATTCTCTCGTCCTTCTTCAGTAA---------CTGAGATAGAAGTCTCGCT
                      ____________________________________________________________
consensus             GACTGTCTCATTCTCTCGTCCTTCTTCAGTAACTGTAATCCCTGAGATAGAAGTCTCGCT
 
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JMFS072H09+           GGCAACAGAATCACGATAACGTCTACTCGTGTGACTGCGTGAACCTCTAGATGGAACATC
JMFS062C07+           GGCAACAGAATCACGATAACGTCTACTCGTGTGACTGCGTGAACCTCTAGATGGAACATC
JMSF028H10+           GGCAACAGAATCACGATAACGTCTACTCGTGTGACTGCGTGAACCTCTAGATGGAACATC
JMFS150A01+                                                           AGATGGAACATC
                      ____________________________________________________________
consensus             GGCAACAGAATCACGATAACGTCTACTCGTGTGACTGCGTGAACCTCTAGATGGAACATC
 
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JMFS072H09+           TTCTAATTGTCCAGTCTCAGTAGAAGTCTCTTCATCTATAGCTGACACAACAGTAGCTAC
JMFS062C07+           TTCTAATTGTCCAGTCTCAGTAGAAGTCTCTTCATCTATAGCTGACACAACAGTAGCTAC
JMSF028H10+           TTCTAATTGTCCAGTCTCAGTAGAAGTCTCTTCATCTATAGCTGACACAACAGTAGCTAC
JMFS150A01+           TTCTAATTGTCCAGTCTCAGTAGAAGTCTCTTCATCTATAGCTGACACAACAGTAGCTAC
                      ____________________________________________________________
consensus             TTCTAATTGTCCAGTCTCAGTAGAAGTCTCTTCATCTATAGCTGACACAACAGTAGCTAC
 
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JMFS072H09+           TCTTTCCCTTGGAACTTTAAATGAATTCTCTATTGTAGATCCTCCTCTTTTCGCACTTGC
JMFS062C07+           TCTTTCCCTTGGAACTTTAAATGAATTCTCTATTGTAGATCCTCCTCTTTTCGCACTTGC
JMSF028H10+           TCTTTCCCTTGGAACTTTAAATGAATTCTCTATTGTAGATCCTCCTCTTTTCGCACTTGC
JMFS150A01+           TCTTTCCCTTGGAACTTTAAATGAATTCTCTATTGTAGATCCTCCTCTTTTCGCACTTGC
                      ____________________________________________________________
consensus             TCTTTCCCTTGGAACTTTAAATGAATTCTCTATTGTAGATCCTCCTCTTTTCGCACTTGC
 
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JMFS072H09+           AAGCACATCTAGCCCAAGAAGTGATTTCCGCTCTGGAGGTCTAAAAACAACACGATCCTT
JMFS062C07+           AAGCACATCTAGCCCAAGAAGTGATTTCCGCTCTGGAGGTCTAAAAACAACACGATCCTT
JMSF028H10+           AAGCACATCTAGCCCAAGAGGTGATTTCCGCTCTGGAGGTCTAAAAACAACACGATCCTT
JMFS150A01+           AAGCACATCTAGCCCAAGAAGTGATTTCCGCTCTGGAGGTCTAAAAACAACACGATCCTT
                      ____________________________________________________________
consensus             AAGCACATCTAGCCCAAGAAGTGATTTCCGCTCTGGAGGTCTAAAAACAACACGATCCTT
 
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JMFS072H09+           CCCAGGAATATATAAACCACCACCACTGGCGCCATCAGGTTCCAAAGTAGTAGTTGTCTT
JMFS062C07+           CCCAGGAATATATAAACCACCACCACTGGCGCCATCAGGTTCCAAAGTAGTAGTTGTCTT
JMSF028H10+           CCCAGGAATATATAAACCACCACCACTGGCGCCATCAGGTTCCAAAGTAGTAGTTGTCTT
JMFS150A01+           CCCAGGAATATATAAACCACCACCACTGGCGCCATCAGGTTCCAAAGTAGTAGTTGTCTT
                      ____________________________________________________________
consensus             CCCAGGAATATATAAACCACCACCACTGGCGCCATCAGGTTCCAAAGTAGTAGTTGTCTT
 
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JMFS072H09+           GTCAAGGTCTATTGGTCCAGTAACCTCTCCCTCTACAGGTTTCTGCATGTTCCTCAATAT
JMFS062C07+           GTCAAGGTCTATTGGTCCAGTAACCTCTCCCTCTACAGGTTTCTGCATGTTCCTCAATAT
JMSF028H10+           GTCAAGGTCTATTGGTCCAGTAACCTCTCCCTCTACAGGTTTCTGCATGTTCCTCAATAT
JMFS150A01+           GTCAAGGTCTATTGGTCCAGTAACCTCTCCCTCTACAGGTTTCTGCATGTTCCTCAATAT
                      ____________________________________________________________
consensus             GTCAAGGTCTATTGGTCCAGTAACCTCTCCCTCTACAGGTTTCTGCATGTTCCTCAATAT
 
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JMFS072H09+           CAGCAAAATAAGTCTTCTACTTCTTGACCCCTCAAGAAACTGATTGGATGAAGGCGACAA
JMFS062C07+           CAGCAAAATAAGTCTTCTACTTCTTGACCCCTCAAGAAACTGATTGGATGAAGGCGACAA
JMSF028H10+           CAGCAAAATAAGTCTTCTACTTCTTGACCCCTCAAGAAACTGATTGGATGAAGGCGACAA
JMFS150A01+           CAGCAAAATAAGTCTTCTACTTCTTGACCCCTCAAGAAACTGATTGGATGAAGGCGACAA
                      ____________________________________________________________
consensus             CAGCAAAATAAGTCTTCTACTTCTTGACCCCTCAAGAAACTGATTGGATGAAGGCGACAA
 
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JMFS072H09+           TAACGGGAGAGGCGTGAGACTGGAAGCAAAGTTGGAAGTGCGAGGCGAGAGCGCGCAGAA
JMFS062C07+           TAACGGGAGAGGCGTGAGACTGGAAGCAAAGTTGGAAGTGCGAGGCGAGAGCGCGCAGAA
JMSF028H10+           TAACGGGAGAGGCGTGAGACTGGAAGCAAAGTTGGAAGTGCGAGGCGAGAGCGCGCAGAA
JMFS150A01+           TAACGGGAGAGGCGTGAGACTGGAAGCAAAGTTGGAAGTGCGAGGCGAGAGCGCGCAGAA
                      ____________________________________________________________
consensus             TAACGGGAGAGGCGTGAGACTGGAAGCAAAGTTGGAAGTGCGAGGCGAGAGCGCGCAGAA
 
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JMFS072H09+           GGAGTTG                                                     
JMFS062C07+           GGAGTTGAATCAGGGTAAT                                         
JMSF028H10+           GGAGTTGAATCAGGGTAATTGGGTAATGAATAGAAGAGCAAGGAGTGAAGTTTTTATTGT
JMFS150A01+           GGAGTTGAATCAGGGTAATTGGGTAATGAATAGAAGAGCAAGGAGTGAAGTTTTTATTGT
                      ____________________________________________________________
consensus             GGAGTTGAATCAGGGTAATTGGGTAATGAATAGAAGAGCAAGGAGTGAAGTTTTTATTGT
 
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JMSF028H10+           TCAGGATTTGAATCCCAATCCT                                      
JMFS150A01+           TCAGGATTTGAATCCCAATCCTAATCCGATTGGAGAAGGAACAACTGTTTTTAAGAATAA
                      ____________________________________________________________
consensus             TCAGGATTTGAATCCCAATCCTAATCCGATTGGAGAAGGAACAACTGTTTTTAAGAATAA