Contig 002008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143A04Sequence614002008 (2)ref|XP_009625334.1|5e-08PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B'
JMSF018D07Sequence510002008 (2)756008547 (4)emb|CDP16651.1|1e-82unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS143A04+                                                         AAGAAGCATTAGGA
                      ____________________________________________________________
consensus                                                           AAGAAGCATTAGGA
 
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JMFS143A04+           GGAAAAGTAGAGGTTCCCCCATCACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGT
                      ____________________________________________________________
consensus             GGAAAAGTAGAGGTTCCCCCATCACGATTGTCAGCTGACTTTGAGGGCTTCCGTGGGAGT
 
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JMSF018D07+                              TCATCACTGGGAACTACAGGATTAAGTTCACTTCAAGTAAT
JMFS143A04+           CTGTTGAGTATCTGTTTGATCATCACTGGGAACTACAGGATTAAGTTCACTTCAAGTAAT
                      ____________________________________________________________
consensus             CTGTTGAGTATCTGTTTGATCATCACTGGGAACTACAGGATTAAGTTCACTTCAAGTAAT
 
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JMSF018D07+           CCTAACAGGTATGTTGATTGAATAGCTTACAACAGAGTGCAAACCACAAATGATAATAAC
JMFS143A04+           CCTAACAGGTATGTTGATTGAATAGCTTACAACAGAGTGCAAACCACAAATGATAATAAC
                      ____________________________________________________________
consensus             CCTAACAGGTATGTTGATTGAATAGCTTACAACAGAGTGCAAACCACAAATGATAATAAC
 
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JMSF018D07+           ATTTGCAGCAACAATCAGGAAATCAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGG
JMFS143A04+           ATTTGCAGCAACAATCAGGAAATCAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGG
                      ____________________________________________________________
consensus             ATTTGCAGCAACAATCAGGAAATCAACCCAATCAAACCTGCTAACAGCAACCCAGTGAGG
 
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JMSF018D07+           ATCTAATCACCTCATAGGCTCTCTGTGTTCCTGACCAACAGAATCCAACATCCACAGTCT
JMFS143A04+           ATCTAATCACCTCATAGGCTCTCTGTGTTCCTGACCAACAGAATCCAACATCCACAGTCT
                      ____________________________________________________________
consensus             ATCTAATCACCTCATAGGCTCTCTGTGTTCCTGACCAACAGAATCCAACATCCACAGTCT
 
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JMSF018D07+           ATGAATTCAAGTTCTTGTTCTTCTACTCTAAGTGAAAAAATCCCTTCCTTATCT      
JMFS143A04+           ATGAATTCAAGTTCTTGTTCTTCTACTCTAAGTGAAAAAATCCCTTCCTTATCTGGCCAG
                      ____________________________________________________________
consensus             ATGAATTCAAGTTCTTGTTCTTCTACTCTAAGTGAAAAAATCCCTTCCTTATCTGGCCAG
 
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JMFS143A04+           TTAAAACAGTTAACATAAGAAAACCAAAATGAAGAACATCAAGGTTAACCGATTGTATAA
                      ____________________________________________________________
consensus             TTAAAACAGTTAACATAAGAAAACCAAAATGAAGAACATCAAGGTTAACCGATTGTATAA
 
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JMFS143A04+           AAGTCAAATCTCGCTACTAATCCAGCATCCAAAAGTCAAATTCCCCATTTTTTATGAAAA
                      ____________________________________________________________
consensus             AAGTCAAATCTCGCTACTAATCCAGCATCCAAAAGTCAAATTCCCCATTTTTTATGAAAA
 
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JMFS143A04+           TTTTTGTACCAAGTTGGTGAAAGTTTTCTTTTTTTCCCCAACTGTGCAGTGCAAGTATAG
                      ____________________________________________________________
consensus             TTTTTGTACCAAGTTGGTGAAAGTTTTCTTTTTTTCCCCAACTGTGCAGTGCAAGTATAG
 
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JMFS143A04+           GTTTAAGCCCCAAACACCCACTATAACAATCAAATCTGCTGACCCATTAAGCTCTCCTCA
                      ____________________________________________________________
consensus             GTTTAAGCCCCAAACACCCACTATAACAATCAAATCTGCTGACCCATTAAGCTCTCCTCA