Contig 002005:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS140C02Sequence626002005 (4)ref|XP_006359790.1|5e-30PREDICTED: putative late blight resistance protein homolog R1B-17-like [Solanum
JMFS140C03Sequence626002005 (4)ref|XP_006359790.1|5e-30PREDICTED: putative late blight resistance protein homolog R1B-17-like [Solanum
JMSF047C09Sequence643002005 (4)ref|XP_006362574.1|3e-58PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum810012756 (3)ref|XP_011070823.1|1e-41PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi
JMSF051J19Sequence697002005 (4)ref|XP_006362574.1|9e-66PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum803012756 (3)ref|XP_011070823.1|6e-42PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi

Alignment

This contig is upended


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JMSF051J19+                          CTCCNGGACGCTGCACTTCAAGAGGACAATTTTCCTTGCGAAAAA
                      ____________________________________________________________
consensus                            CTCCNGGACGCTGCACTTCAAGAGGACAATTTTCCTTGCGAAAAA
 
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JMSF051J19+           CCTTCCTCCTCAGTAACTCCCAACTTTCGTCATTTGTTAAAAATTTCAAATGGTGGGGAC
JMSF047C09+                    TCAGTAACTCCCAACTTTCGTCATTTGTTAAAAATTTCAAATGGTGGGGAC
                      ____________________________________________________________
consensus             CCTTCCTCCTCAGTAACTCCCAACTTTCGTCATTTGTTAAAAATTTCAAATGGTGGGGAC
 
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JMSF051J19+           TACTACCCGAATCTGCATGTGAAGCTACATTCTCATGCCGAGTTGTTAAAAGGACTCTAC
JMSF047C09+           TACTACCCGAATCTGCATGTGAAGCTACATTCTCATGCCGAGTTGTTAAAAGGACTCTAC
                      ____________________________________________________________
consensus             TACTACCCGAATCTGCATGTGAAGCTACATTCTCATGCCGAGTTGTTAAAAGGACTCTAC
 
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JMSF051J19+           TACCTTTCATGTTTCGAGGAAAGGCGGATTTCAAATGGTCCCAGTCTAGCTGGCTCCACA
JMSF047C09+           TACCTTTCATGTTTCGAGGAAAGGCGGATTTCAAATGGTCCCAGTCTAGCTGGCTCCACA
                      ____________________________________________________________
consensus             TACCTTTCATGTTTCGAGGAAAGGCGGATTTCAAATGGTCCCAGTCTAGCTGGCTCCACA
 
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JMSF051J19+           CATCATCGACCACAATGAAATACTTCCCGCCCTCTAAAAACTCCTTCACTTTATTAGCTA
JMSF047C09+           CATCATCGACCACAATGAAATACTTCCCGCCCTCTAAAAACTCCTTCACTTTATTAGCTA
                      ____________________________________________________________
consensus             CATCATCGACCACAATGAAATACTTCCCGCCCTCTAAAAACTCCTTCACTTTATTAGCTA
 
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JMSF051J19+           ACAGATCATCTGACAAATCATGGTAGTCTTTTGTCTTCTTGGTGAAATTACTCAGGATAT
JMSF047C09+           ACAGATCATCTGACAAATCATGGTAGTCTTTTGTCTTCTTGGTGAAATTACTCAGGATAT
                      ____________________________________________________________
consensus             ACAGATCATCTGACAAATCATGGTAGTCTTTTGTCTTCTTGGTGAAATTACTCAGGATAT
 
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JMSF051J19+           CAAGGAATATTTGCCTTCTACTAAAAGTTTTTGAGACATATACCCAAATTCGAGTAAAAA
JMSF047C09+           CAAGGAATATTTGCCTTCTACTAAAAGTTTTTGAGACATATACCCAAATTCGAGTAAAAA
                      ____________________________________________________________
consensus             CAAGGAATATTTGCCTTCTACTAAAAGTTTTTGAGACATATACCCAAATTCGAGTAAAAA
 
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JMSF051J19+           ACTCATATTGAAGTTCGCTATCATTAAACACCATTTTGGTCAAAGTGGTCTTGCCAAGCC
JMSF047C09+           ACTCATATTGAAGTTCGCTATCATTAAACACCATTTTGGTCAAAGTGGTCTTGCCAAGCC
                      ____________________________________________________________
consensus             ACTCATATTGAAGTTCGCTATCATTAAACACCATTTTGGTCAAAGTGGTCTTGCCAAGCC
 
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JMSF051J19+           CAGCCATTCCCACAATTGAGATGACAATCATTTCATTGGATTTATCAAGAAGACGATCCT
JMSF047C09+           CAGCCATTCCCACAATTGAGATGACAATCATTTCATTGGATTTATCAAGAAGACGATCCT
JMFS140C03+                                             ATTGGATTTATCAAGAAGACGATCCT
JMFS140C02+                                             ATTGGATTTATCAAGAAGACGATCCT
                      ____________________________________________________________
consensus             CAGCCATTCCCACAATTGAGATGACAATCATTTCATTGGATTTATCAAGAAGACGATCCT
 
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JMSF051J19+           TTATAGCTTTCGCCTCTCCATCAAACCCCACAACATCATCTTCTTCCACAACAGGAGCCT
JMSF047C09+           TTATAGCTTTCGCCTCTCCATCAAACCCCACAACATCATCTTCTTCCACAACAGGAGCCT
JMFS140C03+           TTATAGCTTTCGCCTCTCCATCAAACCCCACAACATCATCTTCTTCCACAACAGGAGCCT
JMFS140C02+           TTATAGCTTTCGCCTCTCCATCAAACCCCACAACATCATCTTCTTCCACAACAGGAGCCT
                      ____________________________________________________________
consensus             TTATAGCTTTCGCCTCTCCATCAAACCCCACAACATCATCTTCTTCCACAACAGGAGCCT
 
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JMSF051J19+           TTCTTTGGAGGAACAACTGAGCTTCAGTTGGATCACGTTGGAGTTCCCTAAGGCCAGCAT
JMSF047C09+           TTCTTTGGAGGAACAACTGAGCTTCAGTTGGATCACGTTGGAGTTCCCTAAGGCCAGCAT
JMFS140C03+           TTCTTTGGAGGAACAACTGAGCTTCAGTTGGATCACGTTGGAGTTCCCTAAGGCCAGCAT
JMFS140C02+           TTCTTTGGAGGAACAACTGAGCTTCAGTTGGATCACGTTGGAGTTCCCTAAGGCCAGCAT
                      ____________________________________________________________
consensus             TTCTTTGGAGGAACAACTGAGCTTCAGTTGGATCACGTTGGAGTTCCCTAAGGCCAGCAT
 
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JMSF051J19+           CATGATCTTTTCTAATCTTCGCCACTTTTCCTTTAATGGCATCTATCTGCTT        
JMSF047C09+           CATGATCTTTTCTAATCTTCGCCACTTTTCCTTTAATGGCATCTATCTGCTT        
JMFS140C03+           CATGATCTTTTCTAATCTTCGCCACTTTTCCTTTAATGGCATCTATCTGCTTCGCAGCAT
JMFS140C02+           CATGATCTTTTCTAATCTTCGCCACTTTTCCTTTAATGGCATCTATCTGCTTCGCAGCAT
                      ____________________________________________________________
consensus             CATGATCTTTTCTAATCTTCGCCACTTTTCCTTTAATGGCATCTATCTGCTTCGCAGCAT
 
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JMFS140C03+           CGCTGGCCTTCGAATAGTAAGCAACCTTATCCAAATACCTCATCACCGTACCTTTGGACT
JMFS140C02+           CGCTGGCCTTCGAATAGTAAGCAACCTTATCCAAATACCTCATCACCGTACCTTTGGACT
                      ____________________________________________________________
consensus             CGCTGGCCTTCGAATAGTAAGCAACCTTATCCAAATACCTCATCACCGTACCTTTGGACT
 
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JMFS140C03+           TGTGTTTCCTGGTATCCACTAGGTACTTGTCGATGGCATCCTCGGCTTCGTTGACCACGC
JMFS140C02+           TGTGTTTCCTGGTATCCACTAGGTACTTGTCGATGGCATCCTCGGCTTCGTTGACCACGC
                      ____________________________________________________________
consensus             TGTGTTTCCTGGTATCCACTAGGTACTTGTCGATGGCATCCTCGGCTTCGTTGACCACGC
 
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JMFS140C03+           TTCGGATCTTATCCACTACGTCCCTCAGGACATCGTTGTCGTTGCTGCTTTCGTGCTTCG
JMFS140C02+           TTCGGATCTTATCCACTACGTCCCTCAGGACATCGTTGTCGTTGCTGCTTTCGTGCTTCG
                      ____________________________________________________________
consensus             TTCGGATCTTATCCACTACGTCCCTCAGGACATCGTTGTCGTTGCTGCTTTCGTGCTTCG
 
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JMFS140C03+           ATGCTTGCCTGAGTATGGCTTGGAACGAGTTGAGGTCGTTCACTAGCTCTTCCACATGGT
JMFS140C02+           ATGCTTGCCTGAGTATGGCTTGGAACGAGTTGAGGTCGTTCACTAGCTCTTCCACATGGT
                      ____________________________________________________________
consensus             ATGCTTGCCTGAGTATGGCTTGGAACGAGTTGAGGTCGTTCACTAGCTCTTCCACATGGT
 
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JMFS140C03+           CTCTGATGCCGAGGATTAGCGTGGCGTTTTCTTCCACAACTTGGGCTAGCCTGTTTACCA
JMFS140C02+           CTCTGATGCCGAGGATTAGCGTGGCGTTTTCTTCCACAACTTGGGCTAGCCTGTTTACCA
                      ____________________________________________________________
consensus             CTCTGATGCCGAGGATTAGCGTGGCGTTTTCTTCCACAACTTGGGCTAGCCTGTTTACCA
 
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JMFS140C03+           GTAAGCTAATGGCTGCTTCCGCCATTTTTTTCGTCTGAACAAGTGAAGGTATAAC     
JMFS140C02+           GTAAGCTAATGGCTGCTTCCGCCATTTTTTTCGTCTGAACAAGTGAAGGTATAACXXXXX
                      ____________________________________________________________
consensus             GTAAGCTAATGGCTGCTTCCGCCATTTTTTTCGTCTGAACAAGTGAAGGTATAACNNNNN
 
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JMFS140C02+           XXXXXXXXXXXXXXXXXXXXXXXXXATGGGTGATACTTGAGAGCGAGAGTGGAGGTTTGA
                      ____________________________________________________________
consensus             NNNNNNNNNNNNNNNNNNNNNNNNNATGGGTGATACTTGAGAGCGAGAGTGGAGGTTTGA