Contig 002004:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS140A03Sequence571002004 (2)ref|XP_011088079.1|2e-67PREDICTED: myosin-2 heavy chain [Sesamum indicum]
JMSF043J12Sequence775002004 (2)ref|XP_011088079.1|2e-88PREDICTED: myosin-2 heavy chain [Sesamum indicum]722023615ref|XP_004230689.1|4e-66PREDICTED: MAR-binding filament-like protein 1-1 isoform X1 [Solanum lycopersic

Alignment

This contig is upended


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JMSF043J12+                                                    GTCATGCAGGAGACACTCA
                      ____________________________________________________________
consensus                                                      GTCATGCAGGAGACACTCA
 
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JMSF043J12+           CATTTGTCTTCCAAGCACGTATCCTTAATATCATCCAAAGCATGTTGTCTAATGTCATAA
                      ____________________________________________________________
consensus             CATTTGTCTTCCAAGCACGTATCCTTAATATCATCCAAAGCATGTTGTCTAATGTCATAA
 
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JMSF043J12+           AATTTATTAACAACCTCTCTGAAAACCTCCAGCTGCTTTGATTGCTTTTCTAGGTCACTC
                      ____________________________________________________________
consensus             AATTTATTAACAACCTCTCTGAAAACCTCCAGCTGCTTTGATTGCTTTTCTAGGTCACTC
 
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JMSF043J12+           TGTAGAGTGGCAGTGAGTGCTTTTTCCTCAAGCAATTCACAGCTAATCTTTTCAAATCTT
                      ____________________________________________________________
consensus             TGTAGAGTGGCAGTGAGTGCTTTTTCCTCAAGCAATTCACAGCTAATCTTTTCAAATCTT
 
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JMSF043J12+           TCCTGAAGTGGATAGAATTCTCTTGAATTAAACTCCTCCTGTTCCTTTGCTTTCTCAGCC
JMFS140A03+                                                    TTCCTTTGCTTTCTCAGCC
                      ____________________________________________________________
consensus             TCCTGAAGTGGATAGAATTCTCTTGAATTAAACTCCTCCTGTTCCTTTGCTTTCTCAGCC
 
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JMSF043J12+           TCCATTACAGCATTGTCCCGCTCAGCAAATGCAGAAGCAACACAACCCTGAAAGAACTTA
JMFS140A03+           TCCATTACAGCATTGTCCCGCTCAGCAAATGCAGAAGCAACACAACCCTGAAAGAACTTA
                      ____________________________________________________________
consensus             TCCATTACAGCATTGTCCCGCTCAGCAAATGCAGAAGCAACACAACCCTGAAAGAACTTA
 
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JMSF043J12+           AGCTGTTTTTCTGCTTCAATGTTCTTGGAGACTTCTGCACTATGTAAATCTGCTAGCTGA
JMFS140A03+           AGCTGTTTTTCTGCTTCAATGTTCTTGGAGACTTCTGCACTATGTAAATCTGCTAGCTGA
                      ____________________________________________________________
consensus             AGCTGTTTTTCTGCTTCAATGTTCTTGGAGACTTCTGCACTATGTAAATCTGCTAGCTGA
 
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JMSF043J12+           CTCTTGACATGATAGGCTTCTGAAAGCTCCTCTTGAAGATTTTGATTTTCTCTAGTGCAA
JMFS140A03+           CTCTTGACATGATAGGCTTCTGAAAGCTCCTCTTGAAGATTTTGATTTTCTCTAGTGCAA
                      ____________________________________________________________
consensus             CTCTTGACATGATAGGCTTCTGAAAGCTCCTCTTGAAGATTTTGATTTTCTCTAGTGCAA
 
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JMSF043J12+           GCAGCTAACTTCTTTTTTAAGTTTTCAATCTCTTGCTCCAACGCAGCTGTCCTGTGAAGG
JMFS140A03+           GCAGCTAACTTCTTTTTTAAGTTTTCAATCTCTTGCTCCAACGCAGCTGTCCTGTGAAGG
                      ____________________________________________________________
consensus             GCAGCTAACTTCTTTTTTAAGTTTTCAATCTCTTGCTCCAACGCAGCTGTCCTGTGAAGG
 
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JMSF043J12+           TGCATACGAGTAGCCACACCTAGATAGGCAGGTCCGGCTTGTTGCATGCATAGCTGTTCA
JMFS140A03+           TGCATACGAGTAGCCACACCTAGATAGGCAGGTCCGGCTTGTTGCATGCATAGCTGTTCA
                      ____________________________________________________________
consensus             TGCATACGAGTAGCCACACCTAGATAGGCAGGTCCGGCTTGTTGCATGCATAGCTGTTCA
 
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JMSF043J12+           ATGTCTTTATGCAAGTCATCCCGCTCACGCTCCAACTGCTGAATACGAGCATGAAAGGCT
JMFS140A03+           ATGTCTTTATGCAAGTCATCCCGCTCACGCTCCAACTGCTGAATACGAGCATGAAAGGCT
                      ____________________________________________________________
consensus             ATGTCTTTATGCAAGTCATCCCGCTCACGCTCCAACTGCTGAATACGAGCATGAAAGGCT
 
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JMSF043J12+           GTATTGTCTTCCAAATTTCCTTCCATAGCTGAAACTCTGGGAATGGTAGCAGAACGAAAA
JMFS140A03+           GTATTGTCTTCCAAATTTCCTTCCATAGCTGAAACTCTGGGAATGGTAGCAGAACGAAAA
                      ____________________________________________________________
consensus             GTATTGTCTTCCAAATTTCCTTCCATAGCTGAAACTCTGGGAATGGTAGCAGAACGAAAA
 
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JMSF043J12+           TTCGGAAACGATGGGGCAGGAGAGGGGGTATTGATTGTGTGTAGTTAATCCCCTCCGCCC
JMFS140A03+           TTCGGAAACGATGGGGCAGGAGAGGGGGTATTGATTGTGTGTAGTTAATCCCCTCCGCCC
                      ____________________________________________________________
consensus             TTCGGAAACGATGGGGCAGGAGAGGGGGTATTGATTGTGTGTAGTTAATCCCCTCCGCCC
 
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JMSF043J12+           AATGATTGCTTAAACCGGAAGAGCTGCTCTCTTCC                         
JMFS140A03+           AATGATTGCTTAAACCGGAAGAGCTGCTCTCTTCCTTCCCAAGTCTACTTTCCTGTCCCG
                      ____________________________________________________________
consensus             AATGATTGCTTAAACCGGAAGAGCTGCTCTCTTCCTTCCCAAGTCTACTTTCCTGTCCCG