Contig 002003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030N12Sequence562008809 (2)ref|XP_009625133.1|2e-19PREDICTED: transcription factor ICE1-like [Nicotiana tomentosiformis]728002003 (2)ref|XP_009769541.1|1e-89PREDICTED: transcription factor ICE1-like [Nicotiana sylvestris]
JMFS139H04Sequence575002003 (2)ref|XP_003602756.1|2e-40Inducer of CBF expression [Medicago truncatula]

Alignment

This contig is upended


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rJMFF030N12+                                               CCAAAGATTAGTAAGATGGACAG
                      ____________________________________________________________
consensus                                                  CCAAAGATTAGTAAGATGGACAG
 
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rJMFF030N12+          AGCTTCGATTTTAGGGGATGCAATTGAATACTTGAAGGAACTTCTGCAGAAAATCAATGA
                      ____________________________________________________________
consensus             AGCTTCGATTTTAGGGGATGCAATTGAATACTTGAAGGAACTTCTGCAGAAAATCAATGA
 
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rJMFF030N12+          CCTCCACAATGAACTCGAGTCTACTCCACCTTGCTCCGCATTAACCCCTAATTCAAGTTT
                      ____________________________________________________________
consensus             CCTCCACAATGAACTCGAGTCTACTCCACCTTGCTCCGCATTAACCCCTAATTCAAGTTT
 
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rJMFF030N12+          CTACCCGTTGACACCAACTGCTTCTGCCCTACCCTGCCGTATCAAAGAAGAAATCAGTCC
                      ____________________________________________________________
consensus             CTACCCGTTGACACCAACTGCTTCTGCCCTACCCTGCCGTATCAAAGAAGAAATCAGTCC
 
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rJMFF030N12+          AACTGCATTTGCAAGCCCGCTATCTAGTCCAACTGGACAGCCTGCAAGGGTTGAAGTAAG
JMFS139H04+                                    AGTCCAACTGGACAGCCTGCAAGGGTTGAAGTAAG
                      ____________________________________________________________
consensus             AACTGCATTTGCAAGCCCGCTATCTAGTCCAACTGGACAGCCTGCAAGGGTTGAAGTAAG
 
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rJMFF030N12+          GGTTAGAGAAGGAAGAGCGGTGAACATCCATATGTTTTGTAGCCGCAAACCCGGGCTATT
JMFS139H04+           GGTTAGAGAAGGAAGAGCGGTGAACATCCATATGTTTTGTAGCCGCAAACCCGGGCTATT
                      ____________________________________________________________
consensus             GGTTAGAGAAGGAAGAGCGGTGAACATCCATATGTTTTGTAGCCGCAAACCCGGGCTATT
 
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rJMFF030N12+          ACTTTCAACGATGAAGGCTCTTGACAACCTTGGTATAGACATCCAACAGGCTGTTATCAG
JMFS139H04+           ACTTTCAACGATGAAGGCTCTTGACAACCTTGGTATAGACATCCAACAGGCTGTTATCAG
                      ____________________________________________________________
consensus             ACTTTCAACGATGAAGGCTCTTGACAACCTTGGTATAGACATCCAACAGGCTGTTATCAG
 
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rJMFF030N12+          CTGCTTCAACGGGTTTGCGTTGGATATTTTCCGAGCAGAGCAATGCAAGGAAGGCCAAGA
JMFS139H04+           CTGCTTCAACGGGTTTGCGTTGGATATTTTCCGAGCAGAGCAATGCAAGGAAGGCCAAGA
                      ____________________________________________________________
consensus             CTGCTTCAACGGGTTTGCGTTGGATATTTTCCGAGCAGAGCAATGCAAGGAAGGCCAAGA
 
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rJMFF030N12+          CATCCATCCAGATCAAATCAAAGCTGTACTTATGGACTCCGCTAGCTTCAACGGGATGAT
JMFS139H04+           CATCCATCCAGATCAAATCAAAGCTGTACTTATGGACTCCGCTAGCTTCAACGGGATGAT
                      ____________________________________________________________
consensus             CATCCATCCAGATCAAATCAAAGCTGTACTTATGGACTCCGCTAGCTTCAACGGGATGAT
 
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rJMFF030N12+          CTAAGCTGTACTCAAGGTCACGGTTTTCAATGTCGTTATTCAGATCAACTTTGCAGTCCT
JMFS139H04+           CTAAGCTGTACTCAAGGTCACGGTTTTCAATGTCGTTATTCAGATCAACTTTGCAGTCCT
                      ____________________________________________________________
consensus             CTAAGCTGTACTCAAGGTCACGGTTTTCAATGTCGTTATTCAGATCAACTTTGCAGTCCT
 
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rJMFF030N12+          CCTGATATGCATCACTCGTAGCAGATAATGTCGTCCTCGTAAGTCATAACCTTTGGAATT
JMFS139H04+           CCTGATATGCATCACTCGTAGCAGATAATGTCGTCCTCGTAAGTCATAACCTTTGGAATT
                      ____________________________________________________________
consensus             CCTGATATGCATCACTCGTAGCAGATAATGTCGTCCTCGTAAGTCATAACCTTTGGAATT
 
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rJMFF030N12+          TCAATATTTCGGATTAGTTTAGCATTAAGCATGGCGTTGTTTTGTATTTTGCCCCCGGAA
JMFS139H04+           TCAATATTTCGGATTAGTTTAGCATTAAGCATGGCGTTGTTTTGTATTTTGCCCCCGGAA
                      ____________________________________________________________
consensus             TCAATATTTCGGATTAGTTTAGCATTAAGCATGGCGTTGTTTTGTATTTTGCCCCCGGAA
 
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rJMFF030N12+          GAAACACCGTTATTTTGCTTTGTAGTTCTGCAAAC                         
JMFS139H04+           GAAACACCGTTATTTTGCTTTGTAGTTCTGCAAACTGAATGCAGAGATTTTACCATTCCA
                      ____________________________________________________________
consensus             GAAACACCGTTATTTTGCTTTGTAGTTCTGCAAACTGAATGCAGAGATTTTACCATTCCA
 
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JMFS139H04+           ACCTGGTTTCAAGTTTGCTCTCTTACATTCTATATATATTATGGTTATTTGACTATAGAG
                      ____________________________________________________________
consensus             ACCTGGTTTCAAGTTTGCTCTCTTACATTCTATATATATTATGGTTATTTGACTATAGAG