| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009A09 | Sequence | 548 | 013328 (5) | 697 | 002001 (5) | ref|XP_006359278.1| | 1e-63 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMFF023N11 | Sequence | 533 | 013328 (5) | 749 | 002001 (5) | ref|XP_006359278.1| | 1e-74 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMFS138E03 | Sequence | 593 | 002001 (5) | ref|XP_006359278.1| | 5e-22 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||||
| JMSF019A13 | Sequence | 457 | 013328 (5) | 764 | 002001 (5) | ref|XP_006359278.1| | 6e-95 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
| JMSF029L03 | Sequence | 638 | 013328 (5) | 732 | 002001 (5) | ref|XP_006359278.1| | 8e-86 | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Solanum tubero | |||
This contig is upended
. : . : . : . : . : . :
rJMSF019A13+ AGTGTGGAGTGCTTGGGGC
____________________________________________________________
consensus AGTGTGGAGTGCTTGGGGC
. : . : . : . : . : . :
rJMSF019A13+ TGGATGGAGTGGAAAGAAGGAAATATTTCCACTGCAAGGGAACTATACCAGAAAGTGTTG
rJMSF029L03+ AGAAGGAAATATTTCCACTGCAAGGGAACTATACCAGAAAGTGTTG
____________________________________________________________
consensus TGGATGGAGTGGAAAGAAGGAAATATTTCCACTGCAAGGGAACTATACCAGAAAGTGTTG
. : . : . : . : . : . :
rJMSF019A13+ TCTATCAATTCATCAAATGATCATGCCGCTCGCTGTCTTCAGGCCTGGGGTGTTTTGGAG
rJMSF029L03+ TCTATCAATTCATCAAATGATCATGCCGCTCGCTGTCTTCAGGCCTGGGGTGTTTTGGAG
rJMFF023N11+ CTATCAATTCATCAAATGATCATGCCGCTCGCTGTCTTCAGGCCTGGGGTGTTTTGGAG
rJMFF009A09+ GGAG
____________________________________________________________
consensus TCTATCAATTCATCAAATGATCATGCCGCTCGCTGTCTTCAGGCCTGGGGTGTTTTGGAG
. : . : . : . : . : . :
rJMSF019A13+ CAGAGAGTTGGTAACATTTCTGCGGCTCGAAGACTATTCAGATCTTCTTTGAACATTAAT
rJMSF029L03+ CAGAGAGTTGGTAACATTTCTGCGGCTCGAAGACTATTCAGATCTTCTTTGAACATTAAT
rJMFF023N11+ CAGAGAGTTGGTAACATTTCTGCGGCTCGAAGACTATTCAGATCTTCTTTGAACATTAAT
rJMFF009A09+ CAGAGAGTTGGTAACATTTCTGCGGCTCGAAGACTATTCAGATCTTCTTTGAACATTAAT
____________________________________________________________
consensus CAGAGAGTTGGTAACATTTCTGCGGCTCGAAGACTATTCAGATCTTCTTTGAACATTAAT
. : . : . : . : . : . :
rJMSF019A13+ TCTCAAAGCTATGTGACATGGATGACTTGGGCAGCTTTAGAGGAAGAGCAAGGAAATTCT
rJMSF029L03+ TCTCAAAGCTATGTGACATGGATGACTTGGGCAGCTTTAGAGGAAGAGCAAGGAAATTCT
rJMFF023N11+ TCTCAAAGCTATGTGACATGGATGACTTGGGCAGCTTTAGAGGAAGAGCAAGGAAATTCT
rJMFF009A09+ TCTCAAAGCTATGTGACATGGATGACTTGGGCAGCTTTAGAGGAAGAGCAAGGAAATTCT
____________________________________________________________
consensus TCTCAAAGCTATGTGACATGGATGACTTGGGCAGCTTTAGAGGAAGAGCAAGGAAATTCT
. : . : . : . : . : . :
rJMSF019A13+ GTGCGTGCAGAGGAAATTCGAAACCTCTATTTTCAGCAGCGGACCGATGTGGTTGATGAC
rJMSF029L03+ GTGCGTGCAGAGGAAATTCGAAACCTCTATTTTCAGCAGCGGACCGATGTGGTTGATGAC
rJMFF023N11+ GTGCGTGCAGAGGAAATTCGAAACCTCTATTTTCAGCAGCGGACCGATGTGGTTGATGAC
rJMFF009A09+ GTGCGTGCAGAGGAAATTCGAAACCTCTATTTTCAGCAGCGGACCGATGTGGTTGATGAC
____________________________________________________________
consensus GTGCGTGCAGAGGAAATTCGAAACCTCTATTTTCAGCAGCGGACCGATGTGGTTGATGAC
. : . : . : . : . : . :
rJMSF019A13+ GAGTCCTGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
rJMSF029L03+ GAGTCCTGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
rJMFF023N11+ GAGTCCTGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
rJMFF009A09+ GAGTCCTGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
JMFS138E03+ TGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
____________________________________________________________
consensus GAGTCCTGGGTTATGGGATTCCTAGACATCATTGATCCGACTATTGACAGATTGAAAAGA
. : . : . : . : . : . :
rJMSF019A13+ ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
rJMSF029L03+ ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
rJMFF023N11+ ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
rJMFF009A09+ ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
JMFS138E03+ ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
____________________________________________________________
consensus ATCTTCAACTTGGATCAGAATTCTTTCGTCAAGGCCTCGGATTCCTCCAAAAGTGTAACG
. : . : . : . : . : . :
rJMSF019A13+ GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
rJMSF029L03+ GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
rJMFF023N11+ GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
rJMFF009A09+ GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
JMFS138E03+ GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
____________________________________________________________
consensus GGAACTGATGATAATTCCAGCAGTGAAGAACCAGATACCAATGGCAGTAGGTTAGATACT
. : . : . : . : . : . :
rJMSF019A13+ GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
rJMSF029L03+ GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
rJMFF023N11+ GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
rJMFF009A09+ GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
JMFS138E03+ GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
____________________________________________________________
consensus GCCAGTGGCTTCAACTTGGATAAATTCATCCGCGAAAACCTATCTTTGGAGCCCTCGAAA
. : . : . : . : . : . :
rJMSF019A13+ CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
rJMSF029L03+ CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
rJMFF023N11+ CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
rJMFF009A09+ CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
JMFS138E03+ CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
____________________________________________________________
consensus CTCGAGGGTCAGTTTGGATGGTGTCTTAGACAAGACCCAAAGAACATCAGACCTCCAAGG
. : . : . : . : . : . :
rJMSF019A13+ CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
rJMSF029L03+ CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
rJMFF023N11+ CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
rJMFF009A09+ CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
JMFS138E03+ CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
____________________________________________________________
consensus CAGGTTTGGCAAAAGAGAGAGAGTACTTCCCAGAAATCTCCAAAGCTTTGATTTTGAGTT
. : . : . : . : . : . :
rJMSF019A13+ CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
rJMSF029L03+ CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
rJMFF023N11+ CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
rJMFF009A09+ CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
JMFS138E03+ CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
____________________________________________________________
consensus CATATTTGCTTAGTTAGTCTGCAGATTGATATATATGAATCATGGCCACTTCTGTAAATT
. : . : . : . : . : . :
rJMSF019A13+ TAACCAGGCAGATTGATATTTGAAT
rJMSF029L03+ TAACCAGGCAGATTGATATTTGAATG
rJMFF023N11+ TAA-CAGGCAGATTGATATTTGAATGTGTATTATTTTATAGTAAGAAGGTGGTGTATGTA
rJMFF009A09+ TAA-CAGGCAGATTGATATTTGAATGTGTATTATTTTATAGTAAGAAGGTGGTGTATGTA
JMFS138E03+ TAA-CAGGCAGATTGATATTTGAATGTGTATTATTTTATAGTAAGAAGGTGGTGTATGTA
____________________________________________________________
consensus TAA-CAGGCAGATTGATATTTGAATGTGTATTATTTTATAGTAAGAAGGTGGTGTATGTA
. : . : . : . : . : . :
rJMFF023N11+ ATGAACATTGGGAACAAAAGATCATCAACTT
rJMFF009A09+ ATGAACATTGGGAACAAAAGATCATCAACTT
JMFS138E03+ ATGAACATTGGGAACAAAAGATCATCAACTTTGTATAATCAAATTTTTGGCAAAGTGATT
____________________________________________________________
consensus ATGAACATTGGGAACAAAAGATCATCAACTTTGTATAATCAAATTTTTGGCAAAGTGATT
. : . : . : . : . : . :
JMFS138E03+ AGAGGTTAAGCAACACCTTAAAAATTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC
____________________________________________________________
consensus AGAGGTTAAGCAACACCTTAAAAATTAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTC