Contig 001997:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS133F09+                                    GAAGCTGCAATTTCTGTATCAATTCTCCCAGAACT
                      ____________________________________________________________
consensus                                      GAAGCTGCAATTTCTGTATCAATTCTCCCAGAACT
 
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JMFS133F09+           ACCTGAACCTTCTGATTCGTAATTATTGCAAAAGCAATAGAATTTCCTCCTGAAAACCTA
                      ____________________________________________________________
consensus             ACCTGAACCTTCTGATTCGTAATTATTGCAAAAGCAATAGAATTTCCTCCTGAAAACCTA
 
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JMFS133F09+           TTCTTCTTCTTCAACATCATCGTTCATGAGCATACACTCAGCTACTTATACCCAACAAGC
                      ____________________________________________________________
consensus             TTCTTCTTCTTCAACATCATCGTTCATGAGCATACACTCAGCTACTTATACCCAACAAGC
 
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JMFS133F09+           GCCAGAAATGCCATGTCTTTGCATGACTCTGATATTCCTAGTTTCTGAAATTAACCACAA
                      ____________________________________________________________
consensus             GCCAGAAATGCCATGTCTTTGCATGACTCTGATATTCCTAGTTTCTGAAATTAACCACAA
 
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JMFS133F09+           CACCACAAATCTCAAGTATTTGGGAAACAATTATTATATCCTAAGTAAACCTAAATTTTA
                      ____________________________________________________________
consensus             CACCACAAATCTCAAGTATTTGGGAAACAATTATTATATCCTAAGTAAACCTAAATTTTA
 
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JMFS133F09+           GTTTGGGTTTAAAACTCTAATAAACAAATTAGTATTCCAAATTGATTTCTCAATGTTGGA
                      ____________________________________________________________
consensus             GTTTGGGTTTAAAACTCTAATAAACAAATTAGTATTCCAAATTGATTTCTCAATGTTGGA
 
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JMFS133F09+           TTGAGTTCAATTTAAAGACTAATATTGAGAGAGAGAAAGGCAGGGTAATGAATGATTAGT
JMFS134E12+                                                       GTAATGAATTATTAGT
                      ____________________________________________________________
consensus             TTGAGTTCAATTTAAAGACTAATATTGAGAGAGAGAAAGGCAGGGTAATGAATTATTAGT
 
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JMFS133F09+           GAACATAAGACAGAAAAAGCCACCTTAATACACAATTACCTAGGATTGAATCTCCTGCAC
JMFS033B04+                                                  CTAGGATTGAATCTCCTGCAC
JMFS116G03+                                                  CTAGGATTGAATCTCCTGCAC
JMFS064H11+                                                  CTAGGATTGAATCTCCTGCAC
JMFS134E12+           GAACATAAGTCAGAAAAAGCTCCCTTAATACACAATTACCTAGGATTGAATCTCCTGCAC
                      ____________________________________________________________
consensus             GAACATAAGTCAGAAAAAGCTCCCTTAATACACAATTACCTAGGATTGAATCTCCTGCAC
 
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JMFS133F09+           AGGAAAAAATATTGAGCCAAGGAGATTCTTGAGAGAGCAGAAGCAGAGCAGCAAACTAAA
JMFS033B04+           AGGAAAAAATATTGAGCCAAGGAGATTCTTGAGAGAGCAGAAGCAGAGCAGCAAACTAAA
JMFS116G03+           AGGAAAAAATATTGAGCCAAGGAGATTCTTGAGAGAGCAGAAGCAGAGCAGCAAACTAAA
JMFS064H11+           AGGAAAAAATATTGAGCCAAGGAGATTCTTGAGAGAGCAGAAGCAGAGCAGCAAACTAAA
JMFS134E12+           AGGAAAAAATATTGAGCCAAGAAGATTCTTGATAGAGCAGAAGCAGAGCAGCAAACTAAA
                      ____________________________________________________________
consensus             AGGAAAAAATATTGAGCCAAGGAGATTCTTGAGAGAGCAGAAGCAGAGCAGCAAACTAAA
 
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JMFS133F09+           GTAATAAACTGAATACGAAACCAGATAAAGCTTACAACTCGGTGAATCAGAGGTTGCACC
JMFS033B04+           GTAATAAACTGAATACGAAACCAGATAAAGCTTACAACTCGGTGAATCAGAGGTTGCACC
JMFS116G03+           GTAATAAACTGAATACGAAACCAGATAAAGCTTACAACTCGGTGAATCAGAGGTTGCACC
JMFS064H11+           GTAATAAACTGAATACGAAACCAGATAAAGCTTACAACTCGGTGAATCAGAGGTTGCACC
JMFS134E12+           GTAATAAACTGAATACGAAACCAGATAAAGCTTGCAACTCGGTGAATCAGAGGTTGCACC
                      ____________________________________________________________
consensus             GTAATAAACTGAATACGAAACCAGATAAAGCTTACAACTCGGTGAATCAGAGGTTGCACC
 
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JMFS133F09+           CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAA                 
JMFS033B04+           CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAATCCAATTCCTAAGCTTG
JMFS116G03+           CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAATCCAATTCCTAAGCTTG
JMFS064H11+           CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAATCCAATTCCTAAGCTTG
JMFS134E12+           CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAATCCAATTCGTAAGCTTG
                      ____________________________________________________________
consensus             CAGACACGAAGCAGAGAAGGAAACCCTAATTGGCTAAATTCAATCCAATTCCTAAGCTTG
 
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JMFS033B04+           AACAGAAGTGGAGAGCGGTAGAAGATAAAATGAGATGCAGAGACGAGAGAGATAGTGGGT
JMFS116G03+           AACAGAAGTGGAGAGCGGTAGAAGATAAAATGAGATGCAGAGACGAGAGAGATAGTGGGT
JMFS064H11+           AACAGAAGTGGAGAGCGGTAGAAGATAAAATGAGATGCAGAGACGAGAGAGATAGTGGGT
JMFS134E12+           AACAGAAGTGGAGAGCGGTAGAAGATAAAATGAGATGCAGAGACGAGAGAGATAGTGGGT
                      ____________________________________________________________
consensus             AACAGAAGTGGAGAGCGGTAGAAGATAAAATGAGATGCAGAGACGAGAGAGATAGTGGGT
 
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JMFS033B04+           TATGGCGAACCCTGGGGAGAGAGTAGCAGAAATTGCAGAAGCGAAGAGCGCGATCACAAG
JMFS116G03+           TATGGCGAACCCTGGGGAGAGAGTAGCAGAAATTGCAGAAGCGAAGAGCGCGATCACAAG
JMFS064H11+           TATGGCGAACCCTGGGGAGAGAGTAGCAGAAATTGCAGAAGCGAAGAGCGCGATCACAAG
JMFS134E12+           TATGGCGAACCCTGGGGAGAGAGTAGCAGAAATTGCAGAAGCGAAGAGCGCGATCACAAA
                      ____________________________________________________________
consensus             TATGGCGAACCCTGGGGAGAGAGTAGCAGAAATTGCAGAAGCGAAGAGCGCGATCACAAG
 
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JMFS033B04+           CTATGCGGCGGCGAAAGCTTCCACGGCGAAAACAGAGTTTGTATTTCCACCGCCCTTTGT
JMFS116G03+           CTATGCGGCGGCGAAAGCTTCCACGGCGAAAACAGAGTTTGTATTTCCACCGCCCTTTGT
JMFS064H11+           CTATGCGGCGGCGAAAGCTTCCACGGCGAAAACAGAGTTTGTATTTCCACCGCCCTTTGT
JMFS134E12+           GTATGCGTCGGCGAAAGCTTCCACGGCGAAAACAGAGTTTGTATTTCCACCGCCCTTTGT
                      ____________________________________________________________
consensus             CTATGCGGCGGCGAAAGCTTCCACGGCGAAAACAGAGTTTGTATTTCCACCGCCCTTTGT
 
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JMFS033B04+           GTAAAATATTGACCGGTCCCGTAGATTTCGAGACGAAAGCAGCACAGCACCGCCAGAACC
JMFS116G03+           GTAAAATATTGACCGGTCCCGTAGATTTCG                              
JMFS064H11+           GTAAAATATTGACCGGTCCCGTAGATTTCGAGACGAAAGCA                   
JMFS134E12+           GTAAAATATTGACCGGTCCCGTAGATTTCGAGACGAAAGCAGCACAGCACCGCCAGAACC
                      ____________________________________________________________
consensus             GTAAAATATTGACCGGTCCCGTAGATTTCGAGACGAAAGCAGCACAGCACCGCCAGAACC
 
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JMFS033B04+           CGCAATCCA                                                   
JMFS134E12+           CGCAATCCACGCGCTTTATTTACTGAAGGAAAATCTGAAATGATGTTTTGCCTAGCATTG
                      ____________________________________________________________
consensus             CGCAATCCACGCGCTTTATTTACTGAAGGAAAATCTGAAATGATGTTTTGCCTAGCATTG
 
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JMFS134E12+           CCAATTGACAAATGGCAGGCAACCCAAAACGATCAAGGAATTGATCCTCTGTGCCGAAAT
                      ____________________________________________________________
consensus             CCAATTGACAAATGGCAGGCAACCCAAAACGATCAAGGAATTGATCCTCTGTGCCGAAAT