Contig 001994:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS131G10Sequence610001994 (2)ref|XP_009773895.1|2e-72PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]
JMFS136C08Sequence487001994 (2)ref|XP_009773895.1|2e-60PREDICTED: exportin-1-like isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS131G10+                                                             ACCAAAATAA
                      ____________________________________________________________
consensus                                                               ACCAAAATAA
 
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JMFS131G10+           CATTTAATTTGTTCAGATATAATCTTTCTCGCCGAAGAAATGCTTCATCACTTGAAAGCT
                      ____________________________________________________________
consensus             CATTTAATTTGTTCAGATATAATCTTTCTCGCCGAAGAAATGCTTCATCACTTGAAAGCT
 
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JMFS136C08+                      TCAGAGATGTAATTTTTCATCCCATCTCGTTGCTCAACAGGCAAAGCAT
JMFS131G10+           TCACAATAAGTTCAGAGATGTAATTTTTCATCCCATCTCGTTGCTCAACAGGCAAAGCAT
                      ____________________________________________________________
consensus             TCACAATAAGTTCAGAGATGTAATTTTTCATCCCATCTCGTTGCTCAACAGGCAAAGCAT
 
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JMFS136C08+           TCCATCTATACTTTATGACACCTTCTAGAACCTGTAAAGCAAAAAATTTGGTATTCAAGT
JMFS131G10+           TCCATCTATACTTTATGACACCTTCTAGAACCTGTAAAGCAAAAAATTTGGTATTCAAGT
                      ____________________________________________________________
consensus             TCCATCTATACTTTATGACACCTTCTAGAACCTGTAAAGCAAAAAATTTGGTATTCAAGT
 
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JMFS136C08+           TTTGTGTGCTGGATAGGACGTGAACCACTTGAAGCCACATGTCTGGGTTATTTTGCAAAT
JMFS131G10+           TTTGTGTGCTGGATAGGACGTGAACCACTTGAAGCCACATGTCTGGGTTATTTTGCAAAT
                      ____________________________________________________________
consensus             TTTGTGTGCTGGATAGGACGTGAACCACTTGAAGCCACATGTCTGGGTTATTTTGCAAAT
 
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JMFS136C08+           CACGCAAAATATGATCAGCAGCAGCCCTCTCCTCCTTAGATCCAGTGCCATAGAAAGCAT
JMFS131G10+           CACGCAAAATATGATCAGCAGCAGCCCTCTCCTCCTTAGATCCAGTGCCATAGAAAGCAT
                      ____________________________________________________________
consensus             CACGCAAAATATGATCAGCAGCAGCCCTCTCCTCCTTAGATCCAGTGCCATAGAAAGCAT
 
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JMFS136C08+           TGACAGTGGCGTCAAGCAATGCGACATCAATCGGCTGACTCAAATCCCTAAGCTTCTCCG
JMFS131G10+           TGACAGTGGCGTCAAGCAATGCGACATCAATCGGCTGACTCAAATTCCTAAGCTTCTCCG
                      ____________________________________________________________
consensus             TGACAGTGGCGTCAAGCAATGCGACATCAATCGGCTGACTCAAATTCCTAAGCTTCTCCG
 
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JMFS136C08+           CCGCCATGG                                                   
JMFS131G10+           CCGCCATGGGAGAGTGATAAACCCTAGAAATCGCAGGAGGGGGAAGAAACCCTAGTTCGA
                      ____________________________________________________________
consensus             CCGCCATGGGAGAGTGATAAACCCTAGAAATCGCAGGAGGGGGAAGAAACCCTAGTTCGA
 
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JMFS131G10+           AGGGGCAACCGGCACGGCTACACCTCGGAGAAGAGGACAAATACAGGGAAGCAGTTGTAT
                      ____________________________________________________________
consensus             AGGGGCAACCGGCACGGCTACACCTCGGAGAAGAGGACAAATACAGGGAAGCAGTTGTAT
 
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JMFS131G10+           ATATATAAGTATGTATGTATATTTGAAAAGGACAAGAAGACAGCTTCGAATTGAAGCAGC
                      ____________________________________________________________
consensus             ATATATAAGTATGTATGTATATTTGAAAAGGACAAGAAGACAGCTTCGAATTGAAGCAGC
 
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JMFS131G10+           AGCAGAAGAAGGAGTTGGAGAGTGAGAGAGAAGACTTTGAAATTGGTTTAAGGGCTTCCC
                      ____________________________________________________________
consensus             AGCAGAAGAAGGAGTTGGAGAGTGAGAGAGAAGACTTTGAAATTGGTTTAAGGGCTTCCC