Contig 001990:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS130H08Sequence623001990 (3)ref|XP_010325898.1|5e-68PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Solanum
JMSF031P11Sequence683012068 (2)gb|AES91498.2|2e-10hypothetical protein MTR_4g114190 [Medicago truncatula]759001990 (3)ref|XP_009600225.1|2e-112PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Nicotian
JMSF044C17Sequence758012068 (2)ref|XP_009773983.1|2e-10PREDICTED: thymidine kinase isoform X3 [Nicotiana sylvestris]756001990 (3)ref|XP_009600225.1|7e-126PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Nicotian

Alignment

This contig is upended


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rJMSF044C17+          CCGAGCGGGAAGATTTGAAGAAGCACAGAGTTTGATTCAGAACATGACGGTTGAAAAGGA
                      ____________________________________________________________
consensus             CCGAGCGGGAAGATTTGAAGAAGCACAGAGTTTGATTCAGAACATGACGGTTGAAAAGGA
 
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rJMSF044C17+          TGAAGGTCTCTGGGGAGCATTGCTGGGAGCCTGCAGGATTCATGGCAGAGTAGAACTTGC
rJMSF031P11+                      GGGAGCATTGCTGGGAGCCTGCAGGATTCATGGCAGAGTAGAACNTGC
                      ____________________________________________________________
consensus             TGAAGGTCTCTGGGGAGCATTGCTGGGAGCCTGCAGGATTCATGGCAGAGTAGAACTTGC
 
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rJMSF044C17+          AGAAATGGCAGCAGATTCACTCCTCGAATTGCAGCCTCAGAATCCCGGGCACTATATACT
rJMSF031P11+          AGAAATGGCAGCAGATTCACTCCTCGAATTGCAGCCTCAGAATCCCGGGCACTATATACT
                      ____________________________________________________________
consensus             AGAAATGGCAGCAGATTCACTCCTCGAATTGCAGCCTCAGAATCCCGGGCACTATATACT
 
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rJMSF044C17+          GCTCGCCAACATTTACGCCAAAGCTGGAAGATGGCAAGACGTCGCCAAGATCCGGGAGCT
rJMSF031P11+          GCTCGCCAACATTTACGCCAAAGCTGGAAGATGGCAAGACGTCGCCAAGATCCGGGAGCT
                      ____________________________________________________________
consensus             GCTCGCCAACATTTACGCCAAAGCTGGAAGATGGCAAGACGTCGCCAAGATCCGGGAGCT
 
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rJMSF044C17+          AATGACACATCAGAGCCTGAAGAAAACGCCCGGCTGGACATGGATCGAAGTGGACAACAA
rJMSF031P11+          AATGACACATCAGAGCCTGAAGAAAACGCCCGGCTGGACATGGATCGAAGTGGACAACAA
JMFS130H08+                                               GACATGGATCGAAGTGGACAACAA
                      ____________________________________________________________
consensus             AATGACACATCAGAGCCTGAAGAAAACGCCCGGCTGGACATGGATCGAAGTGGACAACAA
 
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rJMSF044C17+          CATCCATCGCTTCAGCGTTGCAGATCACACCCACCCTTCCTCGAAGGAGATTTATCAGAA
rJMSF031P11+          CATCCATCGCTTCAGCGTTGCAGATCACACCCACCCTTCCTCGAAGGAGATTTATCAGAA
JMFS130H08+           CATCCATCGCTTCAGCGTTGCAGATCACACCCACCCTTCCTCGAAGGAGATTTATCAGAA
                      ____________________________________________________________
consensus             CATCCATCGCTTCAGCGTTGCAGATCACACCCACCCTTCCTCGAAGGAGATTTATCAGAA
 
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rJMSF044C17+          GCTGAGTCATCTGCGCGGGGAACTCGAGCTTGCTGGATACGTTCCCGATACAGATTTCGT
rJMSF031P11+          GCTGAGTCATCTGCGCGGGGAACTCGAGCTTGCTGGATACGTTCCCGATACAGATTTCGT
JMFS130H08+           GCTGAGTCATCTGCGCGGGGAACTCGAGCTTGCTGGATACGTTCCCGATACAGATTTCGT
                      ____________________________________________________________
consensus             GCTGAGTCATCTGCGCGGGGAACTCGAGCTTGCTGGATACGTTCCCGATACAGATTTCGT
 
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rJMSF044C17+          GCTGCACGACGTTGATGAGGAACTCAAGCTGGAAAGCATATACGCTCACAGCGAGAAGCT
rJMSF031P11+          GCTGCACGACGTTGATGAGGAACTCAAGCTGGAAAGCATATACGCTCACAGCGAGAAGCT
JMFS130H08+           GCTGCACGACGTTGATGAGGAACTCAAGCTGGAAAGCATATACGCTCACAGCGAGAAGCT
                      ____________________________________________________________
consensus             GCTGCACGACGTTGATGAGGAACTCAAGCTGGAAAGCATATACGCTCACAGCGAGAAGCT
 
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rJMSF044C17+          TGCCATTGCATTCGGCCTCATCGCCACACCAGAGGGAACCTCCATTAGTGTCATCAAGAA
rJMSF031P11+          TGCCATTGCATTCGGCCTCATCGCCACACCAGAGGGAACCTCCATTAGTGTCATCAAGAA
JMFS130H08+           TGCCATTGCATTCGGCCTCATCGCCACACCAGAGGGAACCTCCATTAGTGTCATCAAGAA
                      ____________________________________________________________
consensus             TGCCATTGCATTCGGCCTCATCGCCACACCAGAGGGAACCTCCATTAGTGTCATCAAGAA
 
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rJMSF044C17+          CCTCAGAGTCTGCGGCGACTGTCACACGTTTATTAAATTCGTGTCTCTGGTTACGAGCAG
rJMSF031P11+          CCTCAGAGTCTGCGGCGACTGTCACACGTTTATTAAATTCGTGTCTCTGGTTACGAGCAG
JMFS130H08+           CCTCAGAGTCTGCGGCGACTGTCACACGTTTATTAAATTCGTGTCTCTGGTTACGAGCAG
                      ____________________________________________________________
consensus             CCTCAGAGTCTGCGGCGACTGTCACACGTTTATTAAATTCGTGTCTCTGGTTACGAGCAG
 
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rJMSF044C17+          GACGATTGTTGTGCGCGATGCAAATCGGTTCCACCATTTCGGATCTGGTGCTTGTTCTTG
rJMSF031P11+          GACGATTGTTGTGCGCGATGCAAATCGGTTCCACCATTTCGGATCTGGTGCTTGTTCTTG
JMFS130H08+           GACGATTGTTGTGCGCGATGCAAATCGGTTCCACCATTTCGGATCTGGTGCTTGTTCTTG
                      ____________________________________________________________
consensus             GACGATTGTTGTGCGCGATGCAAATCGGTTCCACCATTTCGGATCTGGTGCTTGTTCTTG
 
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rJMSF044C17+          TGGAGATTATTGGTGATGTTATACTGCATTCAGTACTTTCATAATGTGAATCTCCATACC
rJMSF031P11+          TGGAGATTATTGGTGA-GTTATACTGCATTCAGTACTTTCATAATGTGAATCTCCATACC
JMFS130H08+           TGGAGATTATTGGTGA-GTTATACTGCATTCAGTACTTTCATAATGTGAATCTCCATACC
                      ____________________________________________________________
consensus             TGGAGATTATTGGTGA-GTTATACTGCATTCAGTACTTTCATAATGTGAATCTCCATACC
 
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rJMSF031P11+          CAGTTTTTGCTGGTTCACTGCAGAGTGACAGAATGTACTTGTGTCAATTTCCTCAGATAT
JMFS130H08+           CAGTTTTTGCTGGTTCACTGCAGAGTGACAGAATGTACTTGTGTCAATTTCCTCAGATAT
                      ____________________________________________________________
consensus             CAGTTTTTGCTGGTTCACTGCAGAGTGACAGAATGTACTTGTGTCAATTTCCTCAGATAT
 
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rJMSF031P11+          TACTATTCTTGAAACATGAAAATGAGATGGTTCCAAGTTCCAACAGAGAATG        
JMFS130H08+           TACTATTCTTGAAACATGAAAATGAGATGGTTCCAAGTTCCAACAGAGAATGTATACAAT
                      ____________________________________________________________
consensus             TACTATTCTTGAAACATGAAAATGAGATGGTTCCAAGTTCCAACAGAGAATGTATACAAT
 
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JMFS130H08+           TAACAATAATAAAATATAGGAAAATTTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC
                      ____________________________________________________________
consensus             TAACAATAATAAAATATAGGAAAATTTCAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC