Contig 001986:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS020H01Sequence630001986 (5)ref|XP_006347178.1|9e-113PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Solanum tuber
JMFS128E11Sequence405001986 (5)ref|XP_009778973.1|2e-18PREDICTED: katanin p80 WD40 repeat-containing subunit B1 isoform X1 [Nicotiana
JMFS144C02Sequence641001986 (5)ref|XP_006347178.1|4e-117PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Solanum tuber
JMFS160B12Sequence493001986 (5)ref|XP_006347178.1|7e-54PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Solanum tuber
JMSF037F07Sequence687001986 (5)ref|XP_006594334.1|3e-85PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X2 [Gl716010038 (2)emb|CDO99605.1|2e-37unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS020H01+                                                              ATGCAACTT
JMFS144C02+                                             GATCGAATATGTCCTTCATGCAACTT
JMSF037F07+                         CAAGAGGATGAAAATCTATAGATCGAATATGTCCTTCATGCAACTT
                      ____________________________________________________________
consensus                           CAAGAGGATGAAAATCTATAGATCGAATATGTCCTTCATGCAACTT
 
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JMFS020H01+           GAAATCATGCAAATGTTTTCCAGCTGTTAGGTCCCACACCTTAACAACATTATCAGATCC
JMFS144C02+           GAAATCATGCAAATGTTTTCCAGCTGTTAGGTCCCACACCTTAACAACATTATCAGATCC
JMSF037F07+           GAAATCATGCAAATGTTTTCCAGCTGTTAGGTCCCACACCTTAACAACATTATCAGATCC
                      ____________________________________________________________
consensus             GAAATCATGCAAATGTTTTCCAGCTGTTAGGTCCCACACCTTAACAACATTATCAGATCC
 
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JMFS020H01+           GCCAGAAACTACCCACCGACCATCAGGAGTAAATCTTATGGTACTAATTCCTCGTGTGTG
JMFS144C02+           GCCAGAAACTACCCACCGACCATCAGGAGTAAATCTTATGGTACTAATTCCTCGTGTGTG
JMSF037F07+           GCCAGAAACTACCCACCGACCATCAGGAGTAAATCTTATGGTACTAATTCCTCGTGTGTG
                      ____________________________________________________________
consensus             GCCAGAAACTACCCACCGACCATCAGGAGTAAATCTTATGGTACTAATTCCTCGTGTGTG
 
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JMFS020H01+           ACCTTTGTATGTGTGTATGCATCCCTTCTTTCTGATGTCCCATATCTTTAAATTAGTGTC
JMFS160B12+                                                TCCCATATCTTTAAATTAGTGTC
JMFS144C02+           ACCTTTGTATGTGTGTATGCATCCCTTCTTTCTGATGTCCCATATCTTTAAATTAGTGTC
JMSF037F07+           ACCTTTGTATGTGTGTATGCATCCCTTCTTTCTGATGTCCC--ATCTTTAAATTAGTGTC
                      ____________________________________________________________
consensus             ACCTTTGTATGTGTGTATGCATCCCTTCTTTCTGATGTCCCATATCTTTAAATTAGTGTC
 
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JMFS020H01+           CATGGAACCAGAAGCAAAAAACTCACCGAATGGATGAAACTCAACAGCAGTGCAATAGGA
JMFS160B12+           CATGGAACCAGAAGCAAAAAACTCACCGAATGGATGAAACTCAACAGCAGTGCAATAGGA
JMFS144C02+           CATGGAACCAGAAGCAAAAAACTCACCGAATGGATGAAACTCAACAGCAGTGCAATAGGA
JMSF037F07+           CATGGAACCAGAAGCAAAAAACTCACCGAATGGATGAAACTCAACAGCAGTGCAATAGGA
                      ____________________________________________________________
consensus             CATGGAACCAGAAGCAAAAAACTCACCGAATGGATGAAACTCAACAGCAGTGCAATAGGA
 
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JMFS020H01+           TCTGTGTCCACTTAGAGCACGAACCA-----TTTTTGTTTCTTCGAGATCCCATAGCTTT
JMFS160B12+           TCTGTGTCCACTTAGAGCACGAACCACTACATTTTTGTTTCTTCGAGATCCCATAGCTTT
JMFS144C02+           TCTGTGTCCACTTAGAGCACGAACCA-----TTTTTGTTTCTTCGAGATCCCATAGCTTT
JMSF037F07+           TCTGTGTCCACTTAGAGCACGAACCA-----TTTTTGTTTCTTCGAGATCCCATAGCTTT
                      ____________________________________________________________
consensus             TCTGTGTCCACTTAGAGCACGAACCA-----TTTTTGTTTCTTCGAGATCCCATAGCTTT
 
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JMFS020H01+           ATTAAACCAGAAGAAGCCCCAGCCACGACTGAAACCTCTGCTGTATCAAAAGCTACAGAT
JMFS160B12+           ATTAAACCAGAAGAAGCCCCAGCCACGACTGAAACCTCTGCTGTATCAAAAGCTACAGAT
JMFS144C02+           ATTAAACCAGAAGAAGCCCCAGCCACGACTGAAACCTCTGCTGTATCAAAAGCTACAGAT
JMSF037F07+           ATTAAACCAGAAGAAGCCCCAGCCACGACTGAAACCTCTGCTGTATCAAAAGCTACAGAT
                      ____________________________________________________________
consensus             ATTAAACCAGAAGAAGCCCCAGCCACGACTGAAACCTCTGCTGTATCAAAAGCTACAGAT
 
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JMFS020H01+           TCTATTGGACTCGTGTGGCCAGAGAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
JMFS160B12+           TCTATTGGACTCGTGTGGCCAGAAAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
JMFS144C02+           TCTATTGGACTCGTGTGGCCAGAGAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
JMSF037F07+           TCTATTGGACTCGTGTGGCCAGAGAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
JMFS128E11+                          TGGCCAGAGAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
                      ____________________________________________________________
consensus             TCTATTGGACTCGTGTGGCCAGAGAGGCTAGCCGTGGAAGTTGCTTTTCCAATCGACCAG
 
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JMFS020H01+           AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
JMFS160B12+           AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
JMFS144C02+           AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
JMSF037F07+           AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
JMFS128E11+           AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
                      ____________________________________________________________
consensus             AGATTCACTATCTGATCATCTCCCCCAGTGATAAACAACCGACATGTCTTCCTCCCAAAC
 
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JMFS020H01+           CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCTGCAATTTATATCCACGCTT 
JMFS160B12+           CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCT                    
JMFS144C02+           CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCTGCAATTTATATCCACGCTT 
JMSF037F07+           CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCTGCAATTTATATCCACGCTT 
JMFS128E11+           CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCTCTACATTCATTTCAGTCAAG
                      ____________________________________________________________
consensus             CTCAAGCAATTCACGTTCCCCGAATGCGCCACAAATTCCTGCAATTTATATCCACGCTTG
 
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JMFS128E11+           AACCACAAACGAACATTTGTTATTTTTGCAAAAATTCTTCAAACAGTTGAGCTCCCATGG
                      ____________________________________________________________
consensus             AACCACAAACGAACATTTGTTATTTTTGCAAAAATTCTTCAAACAGTTGAGCTCCCATGG
 
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JMFS128E11+           ATGAAAATCCACACTCTAAAGGAAGGAAGCTCAAAATTCAAAATTTATATCAAGTACACT
                      ____________________________________________________________
consensus             ATGAAAATCCACACTCTAAAGGAAGGAAGCTCAAAATTCAAAATTTATATCAAGTACACT
 
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JMFS128E11+           TCCTCACGCAATCTCGATGCTCAAGAGACAGGACAAAGCTTCATTCACAGAGAAAAAAAA
                      ____________________________________________________________
consensus             TCCTCACGCAATCTCGATGCTCAAGAGACAGGACAAAGCTTCATTCACAGAGAAAAAAAA
 
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JMFS128E11+           AGTAATAATTAAGTAAAAAGATCAAAAAGATACGCAATTTATATCCACGCTTGGAATTGG
                      ____________________________________________________________
consensus             AGTAATAATTAAGTAAAAAGATCAAAAAGATACGCAATTTATATCCACGCTTGGAATTGG