Contig 001984:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS128A07Sequence626001984 (2)ref|XP_002265477.1|4e-104PREDICTED: intron-binding protein aquarius [Vitis vinifera]
JMFS162G12Sequence614001984 (2)ref|XP_008367861.1|4e-121PREDICTED: LOW QUALITY PROTEIN: intron-binding protein aquarius-like, partial [

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS162G12+ ACACCCTTCTCCTGTGTAGTTAATGCTAGGTACAAGACTTTCATCCCACATTATCTGTTC
                      ____________________________________________________________
consensus ACACCCTTCTCCTGTGTAGTTAATGCTAGGTACAAGACTTTCATCCCACATTATCTGTTC
 
. : . : . : . : . : . :
JMFS162G12+ ATTAGGGTAAAGAGGAAGAGCATTTATGGCCTCCTTCTGAGATTGTTGTCTCTCAAAAAA
                      ____________________________________________________________
consensus ATTAGGGTAAAGAGGAAGAGCATTTATGGCCTCCTTCTGAGATTGTTGTCTCTCAAAAAA
 
. : . : . : . : . : . :
JMFS162G12+ TGAGACCATGACTTCAATCAAGAAATCAACCCTTTCCGACCATGGATCATCCTTTGATAT
JMFS128A07+ TCCGACCATGGATCATCCTTTGATAT
                      ____________________________________________________________
consensus TGAGACCATGACTTCAATCAAGAAATCAACCCTTTCCGACCATGGATCATCCTTTGATAT
 
. : . : . : . : . : . :
JMFS162G12+ CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
JMFS128A07+ CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
                      ____________________________________________________________
consensus CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
 
. : . : . : . : . : . :
JMFS162G12+ CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
JMFS128A07+ CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
                      ____________________________________________________________
consensus CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
 
. : . : . : . : . : . :
JMFS162G12+ CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
JMFS128A07+ CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
                      ____________________________________________________________
consensus CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
 
. : . : . : . : . : . :
JMFS162G12+ AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
JMFS128A07+ AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
                      ____________________________________________________________
consensus AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
 
. : . : . : . : . : . :
JMFS162G12+ AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
JMFS128A07+ AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
                      ____________________________________________________________
consensus AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
 
. : . : . : . : . : . :
JMFS162G12+ ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
JMFS128A07+ ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
                      ____________________________________________________________
consensus ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
 
. : . : . : . : . : . :
JMFS162G12+ TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
JMFS128A07+ TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
                      ____________________________________________________________
consensus TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
 
. : . : . : . : . : . :
JMFS162G12+ ACAAGCATCATGAA
JMFS128A07+ ACAAGCATCATGAACAGCTGCAAAATCACTTGCATCAATAAATCTATCCTCTGTCTCACT
                      ____________________________________________________________
consensus ACAAGCATCATGAACAGCTGCAAAATCACTTGCATCAATAAATCTATCCTCTGTCTCACT
 
. : . : . : . : . : . :
JMFS128A07+ GTGCTCCATGCTAGGGAAAACCTCAGAATCAAGCACCTGAAGAAACTCCTCAATCAGGTT
                      ____________________________________________________________
consensus GTGCTCCATGCTAGGGAAAACCTCAGAATCAAGCACCTGAAGAAACTCCTCAATCAGGTT
 
. : . : . : . : . : . :
JMFS128A07+ CCTCAAGAATTTTGCTTCCAGCATGTTTGAGGGATCAAAAGGTTCTCCTCTTTTAGATGC
                      ____________________________________________________________
consensus CCTCAAGAATTTTGCTTCCAGCATGTTTGAGGGATCAAAAGGTTCTCCTCTTTTAGATGC