Contig 001984:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS128A07Sequence626001984 (2)ref|XP_002265477.1|4e-104PREDICTED: intron-binding protein aquarius [Vitis vinifera]
JMFS162G12Sequence614001984 (2)ref|XP_008367861.1|4e-121PREDICTED: LOW QUALITY PROTEIN: intron-binding protein aquarius-like, partial [

Alignment

This contig is upended


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JMFS162G12+           ACACCCTTCTCCTGTGTAGTTAATGCTAGGTACAAGACTTTCATCCCACATTATCTGTTC
                      ____________________________________________________________
consensus             ACACCCTTCTCCTGTGTAGTTAATGCTAGGTACAAGACTTTCATCCCACATTATCTGTTC
 
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JMFS162G12+           ATTAGGGTAAAGAGGAAGAGCATTTATGGCCTCCTTCTGAGATTGTTGTCTCTCAAAAAA
                      ____________________________________________________________
consensus             ATTAGGGTAAAGAGGAAGAGCATTTATGGCCTCCTTCTGAGATTGTTGTCTCTCAAAAAA
 
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JMFS162G12+           TGAGACCATGACTTCAATCAAGAAATCAACCCTTTCCGACCATGGATCATCCTTTGATAT
JMFS128A07+                                             TCCGACCATGGATCATCCTTTGATAT
                      ____________________________________________________________
consensus             TGAGACCATGACTTCAATCAAGAAATCAACCCTTTCCGACCATGGATCATCCTTTGATAT
 
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JMFS162G12+           CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
JMFS128A07+           CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
                      ____________________________________________________________
consensus             CAGTTTAAGCTTTTGACAAACCAAATCTCTCAATTCTTCAGGACAAAGCACTGAGAGTTT
 
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JMFS162G12+           CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
JMFS128A07+           CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
                      ____________________________________________________________
consensus             CTTTGAGAGATCAGCACGCCTGTTGATTGCACCTATATTGGCTAGAGCAAGCTCCCGCAA
 
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JMFS162G12+           CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
JMFS128A07+           CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
                      ____________________________________________________________
consensus             CTTGGGAATCTTATTGAATGCAAAAAGTTGGAATGACTGAAAGCGATCATAATGAGAGAG
 
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JMFS162G12+           AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
JMFS128A07+           AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
                      ____________________________________________________________
consensus             AAGGACCTCATCATCAGTCATTTGTCTCCCTAGATGGTCATCAATCTCAAATGTCTCATA
 
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JMFS162G12+           AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
JMFS128A07+           AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
                      ____________________________________________________________
consensus             AAATTGAAGCAAGTCAACAAGCTGTGCAAAGAGTTTTCCTTTCTCGTGCTTATAGAGGGC
 
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JMFS162G12+           ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
JMFS128A07+           ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
                      ____________________________________________________________
consensus             ACTTAAATGACATTTAGCAACAACAGCAACATCAGCAACAAGCGGCCTTATATATCTTCT
 
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JMFS162G12+           TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
JMFS128A07+           TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
                      ____________________________________________________________
consensus             TGTTGGCAGTTGGCTCAGAAGATCAATGAGGAACTCCATAAACCTTTCACAGTATAAGAC
 
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JMFS162G12+           ACAAGCATCATGAA                                              
JMFS128A07+           ACAAGCATCATGAACAGCTGCAAAATCACTTGCATCAATAAATCTATCCTCTGTCTCACT
                      ____________________________________________________________
consensus             ACAAGCATCATGAACAGCTGCAAAATCACTTGCATCAATAAATCTATCCTCTGTCTCACT
 
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JMFS128A07+           GTGCTCCATGCTAGGGAAAACCTCAGAATCAAGCACCTGAAGAAACTCCTCAATCAGGTT
                      ____________________________________________________________
consensus             GTGCTCCATGCTAGGGAAAACCTCAGAATCAAGCACCTGAAGAAACTCCTCAATCAGGTT
 
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JMFS128A07+           CCTCAAGAATTTTGCTTCCAGCATGTTTGAGGGATCAAAAGGTTCTCCTCTTTTAGATGC
                      ____________________________________________________________
consensus             CCTCAAGAATTTTGCTTCCAGCATGTTTGAGGGATCAAAAGGTTCTCCTCTTTTAGATGC