Contig 001978:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS049G06+                                                TGCTGTCAAATCGATGTCCCTAT
                      ____________________________________________________________
consensus                                                  TGCTGTCAAATCGATGTCCCTAT
 
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JMFS049G06+           TTCCAACTCCGAGGACCATCAATGCAATAGCCATACTGTACTCCACTACGAGGCAGATCC
                      ____________________________________________________________
consensus             TTCCAACTCCGAGGACCATCAATGCAATAGCCATACTGTACTCCACTACGAGGCAGATCC
 
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JMFS049G06+           TCAACACATATGTGCCATATATCCCCAGTTCGGTTAATCCTTGGATCCAATGCCAATTCA
JMFS160E05+                                                      GATCCAATGCCAATTCA
                      ____________________________________________________________
consensus             TCAACACATATGTGCCATATATCCCCAGTTCGGTTAATCCTTGGATCCAATGCCAATTCA
 
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JMFS049G06+           ATGGTCCCAGCATCAACACTCTCAGGAAGGATTAAGCGGAGAGTAACTGCAGAAGCATGC
JMFS160E05+           ATGGTCCCAGCATCAACACTCTCAGGAAGGATTAAGCGGAGAGTAACTGCAGAAGCATGC
                      ____________________________________________________________
consensus             ATGGTCCCAGCATCAACACTCTCAGGAAGGATTAAGCGGAGAGTAACTGCAGAAGCATGC
 
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JMFS049G06+           TGAGAAAAAATTGCAAAATTGATCCCAGTTTCAACTTCTGATGCTCCTAATGGATGAGCC
JMFS160E05+           TGAGAAAAAATTGCAAAATTGATCCCAGTTTCAACTTCTGATGCTCCTAATGGATGAGCC
JMFS124A03+                                   CCAGTTTCAACTTCTGATGCTCCTAATGGATGAGCC
                      ____________________________________________________________
consensus             TGAGAAAAAATTGCAAAATTGATCCCAGTTTCAACTTCTGATGCTCCTAATGGATGAGCC
 
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JMFS049G06+           AGGCCCGGGGAAACTCTAATTGATGGTATAGTTTCCAGCATTTGAGAGGATTCTTCCTCG
JMFS160E05+           AGGCCCGGGGAAACTCTAATTGATGGTATAGTTTCCAGCATTTGAGAGGATTCTTCCTCG
JMFS124A03+           AGGCCCGGGGAAACTCTAATTGATGGTATAGTTTCCAGCATTTGAGAGGATTCTTCCTCG
                      ____________________________________________________________
consensus             AGGCCCGGGGAAACTCTAATTGATGGTATAGTTTCCAGCATTTGAGAGGATTCTTCCTCG
 
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JMFS049G06+           ATCAGACGCTGTTCTTCAGCTCGACGAGCAAATACGTTAAGCTTCTTACGCCTGCGACGA
JMFS160E05+           ATCAGACGCTGTTCTTCAGCTCGACGAGCAAATACGTTAAGCTTCTTACGCCTGCGACGA
JMFS124A03+           ATCAGACGCTGTTCTTCAGCTCGACGAGCAAATACGTTAAGCTTCTTACGCCTGCGACGA
                      ____________________________________________________________
consensus             ATCAGACGCTGTTCTTCAGCTCGACGAGCAAATACGTTAAGCTTCTTACGCCTGCGACGA
 
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JMFS049G06+           TCCCCTGCCTTACTGAGAAACCTCCGGCCAGAATTTTCTGATGAAGCCTTTCTACTCCAC
JMFS160E05+           TCCCCTGCCTTACTGAGAAACCTCCGGCCAGAATTTTCTGATGAAGCCTTTCTACTCCAC
JMFS124A03+           TCCCCTGCCTTACTGAGAAACCTCCGGCCAGAATTTTCTGATGAAGCCTTTCTACTCCAC
                      ____________________________________________________________
consensus             TCCCCTGCCTTACTGAGAAACCTCCGGCCAGAATTTTCTGATGAAGCCTTTCTACTCCAC
 
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JMFS049G06+           TTCACACCCATGAGTGAAGATGTGTTAGATGGTGTGAAGAAGGGACGGTTGAAATTACTC
JMFS160E05+           TTCACACCCATGAGTGAAGATGTGTTAGATGGTGTGAAGAAGGGACGGTTGAAATTACTC
JMFS124A03+           TTCACACCCATGAGTGAAGATGTGTTAGATGGTGTGAAGAAGGGACGGTTGAAATTACTC
                      ____________________________________________________________
consensus             TTCACACCCATGAGTGAAGATGTGTTAGATGGTGTGAAGAAGGGACGGTTGAAATTACTC
 
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JMFS049G06+           AAAGTAGGAGGAGGAGGAGGAGGAAGAAGAAGACGATGCATCGTCGACTGCATTTTTATG
JMFS160E05+           AAAGTAGGAGGAGGAGGAGGAGGAAGAAGAAGACGATGCATCGTCGACTGCATTTTTATG
JMFS124A03+           AAAGTAGGAGGAGGAGGAGGAGGAAGAAGAAGACGATGCATCGTCGACTGCATTTTTATG
                      ____________________________________________________________
consensus             AAAGTAGGAGGAGGAGGAGGAGGAAGAAGAAGACGATGCATCGTCGACTGCATTTTTATG
 
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JMFS049G06+           CTCTCGATTGATTCTGGAATGGAATCAGAGCATCAATTGGAAACTGTAG           
JMFS160E05+           CTCTCGATTGATTCTGGAATGGAATCAGAGCATCAATTGGAAACTGTAGGAATAGATATT
JMFS124A03+           CTCTCGATTGATTCTGGAATGGAATCAGAGCATCAATTGGAAACTGTAGGAATAGATATT
                      ____________________________________________________________
consensus             CTCTCGATTGATTCTGGAATGGAATCAGAGCATCAATTGGAAACTGTAGGAATAGATATT
 
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JMFS160E05+           TTCGTGTAGAGAATCTGAAACTGTACTCCCAAGTATTTTGTAGCGATATATTTTTTACTT
JMFS124A03+           TTCGTGTAGAGAATCTGAAACTGTACTCCCAAGTATTTTGTAGCGATATATTTTTTACTT
                      ____________________________________________________________
consensus             TTCGTGTAGAGAATCTGAAACTGTACTCCCAAGTATTTTGTAGCGATATATTTTTTACTT
 
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JMFS160E05+           TTTGTGCTTACAGTTTATTGGAAGAGACTTCTTTGCTTTTACGCTGATGAGTTTTACTCT
JMFS124A03+           TTTGTGCTTACAGTTTATTGGAAGAGACTTCTTTGCTTTTACGCTGATGAGTTTTACTCT
                      ____________________________________________________________
consensus             TTTGTGCTTACAGTTTATTGGAAGAGACTTCTTTGCTTTTACGCTGATGAGTTTTACTCT
 
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JMFS160E05+           GTATTTACTTTTGGCCTTTCG                                       
JMFS124A03+           GTATTTACTTTTGGCCTTTCGGGTGTGAGTGACATTGACACCTTTGTATTGCAGATTTTC
                      ____________________________________________________________
consensus             GTATTTACTTTTGGCCTTTCGGGTGTGAGTGACATTGACACCTTTGTATTGCAGATTTTC