Contig 001977:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS120C03Sequence611001977 (2)ref|XP_009626660.1|9e-35PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A
JMFS120E02Sequence613001977 (2)ref|XP_009626660.1|2e-35PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase A

Alignment

This contig is upended


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JMFS120E02+                                                          GTTGCTTAGATTG
JMFS120C03+                                                            TGCTTAGATTG
                      ____________________________________________________________
consensus                                                            GTTGCTTAGATTG
 
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JMFS120E02+           AGATATTGGAGTGACAAGCAAGAAGATAATAAGTTGCTTGGAATCTCTCCAAATAACTCA
JMFS120C03+           AGATATTGGAGTGACAAGCAAGAAGATAATAAGTTGCTTGGAATCTCTCCAAATAACTCA
                      ____________________________________________________________
consensus             AGATATTGGAGTGACAAGCAAGAAGATAATAAGTTGCTTGGAATCTCTCCAAATAACTCA
 
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JMFS120E02+           TTGCTAGAGAGATCAATAGATTTCACATATGGCAACTCGAACAACTCGAACAACGACTCT
JMFS120C03+           TTGCTAGAGAGATCAATAGATTTCACATATGGCAACTCGAACAACTCGAACAACGACTCT
                      ____________________________________________________________
consensus             TTGCTAGAGAGATCAATAGATTTCACATATGGCAACTCGAACAACTCGAACAACGACTCT
 
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JMFS120E02+           GGAATTCTACCTGATAAGTTCTTCCCAGAGAGCTCAATCTTGGCAACATGTGATGAACCA
JMFS120C03+           GGAATTCTACCTGATAAGTTCTTCCCAGAGAGCTCAATCTTGGCAACATGTGATGAACCA
                      ____________________________________________________________
consensus             GGAATTCTACCTGATAAGTTCTTCCCAGAGAGCTCAATCTTGGCAACATGTGATGAACCA
 
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JMFS120E02+           TCACAAACCAAACCACTCCATTCGCATAAACCTCGAGACGAATTCCAATCACGAAGAGAG
JMFS120C03+           TCACAAACCAAACCACTCCATTCGCATAAACCTCGAGACGAATTCCAATCACGAAGAGAG
                      ____________________________________________________________
consensus             TCACAAACCAAACCACTCCATTCGCATAAACCTCGAGACGAATTCCAATCACGAAGAGAG
 
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JMFS120E02+           CCCAAAGGATCATTCAACGACGCTTTCATCGATACTAGTAGCTCGAGCTCCGAACATTTG
JMFS120C03+           CCCAAAGGATCATTCAACGACGCTTTCATCGATACTAGTAGCTCGAGCTCCGAACATTTG
                      ____________________________________________________________
consensus             CCCAAAGGATCATTCAACGACGCTTTCATCGATACTAGTAGCTCGAGCTCCGAACATTTG
 
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JMFS120E02+           CATGCTTGCAAGCTAAACAATACAAGCACAAAGACGACGAACATGATCAATCTGTTGTTG
JMFS120C03+           CATGCTTGCAAGCTAAACAATACAAGCACAAAGACGACGAACATGATCAATCTGTTGTTG
                      ____________________________________________________________
consensus             CATGCTTGCAAGCTAAACAATACAAGCACAAAGACGACGAACATGATCAATCTGTTGTTG
 
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JMFS120E02+           CCAATCTTTGTCATCTTTTTCGTCGTCAAAAAGCTTTATATCAGCATGAACTCAAGAAGT
JMFS120C03+           CCAATCTTTGTCATCTTTTTCGTCGTCAAAAAGCTTTATATCAGCATGAACTCAAGAAGT
                      ____________________________________________________________
consensus             CCAATCTTTGTCATCTTTTTCGTCGTCAAAAAGCTTTATATCAGCATGAACTCAAGAAGT
 
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JMFS120E02+           GGATTCAATAAGCCAAATGTCAAAGCAGATGAAGATAGCTCAAACAACTTTCTGCTAAGA
JMFS120C03+           GGATTCAATAAGCCAAATGTCAAAGCAGATGAAGATAGCTCAAACAACTTTCTGCTAAGA
                      ____________________________________________________________
consensus             GGATTCAATAAGCCAAATGTCAAAGCAGATGAAGATAGCTCAAACAACTTTCTGCTAAGA
 
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JMFS120E02+           GGTGTGACCCTTCTCCATTTTCAGAATACTGCAGCAATAAGTCTAAGGGTTTGGTAGCTT
JMFS120C03+           GGTGTGACCCTTCTCCATTTTCAGAATACTGCAGCAATAAGTCTAAGGGTTTGGTAGCTT
                      ____________________________________________________________
consensus             GGTGTGACCCTTCTCCATTTTCAGAATACTGCAGCAATAAGTCTAAGGGTTTGGTAGCTT
 
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JMFS120E02+           CTGGGGCTTGGAGAAGAGGAAAAGGCTTTAGAATGGTGATAGTTTAGGAAATGAAGAGGG
JMFS120C03+           CTGGGGCTTGGAGAAGAGGAAAAGGCTTTAGAATGGTGATAGTTTAGGAAATGAAGAGGG
                      ____________________________________________________________
consensus             CTGGGGCTTGGAGAAGAGGAAAAGGCTTTAGAATGGTGATAGTTTAGGAAATGAAGAGGG